Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52200 104 / 9e-28 AtI-2 inhibitor-2, phosphoprotein phosphatase inhibitors (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014992 [exp] 291 / 2e-101 AT5G52200 122 / 5e-35 inhibitor-2, phosphoprotein phosphatase inhibitors (.1.2) Lus10005751 [exp] 137 / 1e-40 AT5G52200 127 / 3e-37 inhibitor-2, phosphoprotein phosphatase inhibitors (.1.2) Lus10027444 [exp] 134 / 2e-39 AT5G52200 123 / 4e-35 inhibitor-2, phosphoprotein phosphatase inhibitors (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G140500 [exp] 149 / 1e-45 AT5G52200 123 / 9e-36 inhibitor-2, phosphoprotein phosphatase inhibitors (.1.2) Potri.012G138600 [exp] 131 / 1e-38 AT5G52200 137 / 2e-41 inhibitor-2, phosphoprotein phosphatase inhibitors (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04979 [flax] [poplar] IPP-2 Protein phosphatase inhibitor 2 (IPP-2)
Representative CDS sequence Show only first row Show all	>Lus10038872 pacid=23150289 polypeptide=Lus10038872 locus=Lus10038872.g ID=Lus10038872.BGIv1.0 annot-version=v1.0 ATGCTCCCTACTCTCTCCTGGCTCGTATTTTCTGCTGGGAGATCTATCGTATCTTCTGTTAGCTTTGTATGCAAGGAAATTCAGATACCTGAATTTGATC TTATGTGTTGTCAACTTGTTTACAGGGGGAATAAACCGAGTGTAAGATGGAATGAAGACAATTTGGACGAGATTGAAGCAAAGAAGCCTGTGAGGCAGAA AATCACTGAACCGAAGACTCCATATCACCCCATGATCGAAGATGACGACGACACTCCATCTCCTACCAAGGACGCCTGTGATGAATGTGTCGACGCAGTC CATGCTGACGAGCTACGTACGAAACTAGACACAGTGGCCTCTTCTTCATTGGGTGGTGGGAACTCCAGCAGGCAACCCACTGGCTGGACATCATCCGAGG ACGATGATGAGTCCGATCTTATGGACCAAGATGACGAAGATGCTGAGAAAGACAGGAAAGCATGCTTCAGGGAGCATAGACGAGCCCATTACGACGAGTT TCGTACAGTGAAAGAACTCCGACGCCAGGGCTCTTACTACGAGGATGCCGAGGCTGAAGCCAATGGCCATAAGAAGGAGTCGAACGGCGACCAATCCGCA CAACCTGCTAATGGATCGTCGTAG
AA sequence Show only first row Show all	>Lus10038872 pacid=23150289 polypeptide=Lus10038872 locus=Lus10038872.g ID=Lus10038872.BGIv1.0 annot-version=v1.0 MLPTLSWLVFSAGRSIVSSVSFVCKEIQIPEFDLMCCQLVYRGNKPSVRWNEDNLDEIEAKKPVRQKITEPKTPYHPMIEDDDDTPSPTKDACDECVDAV HADELRTKLDTVASSSLGGGNSSRQPTGWTSSEDDDESDLMDQDDEDAEKDRKACFREHRRAHYDEFRTVKELRRQGSYYEDAEAEANGHKKESNGDQSA QPANGSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G52200		AtI-2	inhibitor-2, phosphoprotein ph...		Lus10038872 [exp]	0	1
AT3G08790			ENTH/VHS/GAT family protein (....		Lus10011689 [exp]	2.0	0.9247
AT3G47000			Glycosyl hydrolase family prot...		Lus10005871 [exp]	6.3	0.9207
AT4G19810		ChiC	class V chitinase, Glycosyl hy...		Lus10032626 [exp]	12.5	0.8504
AT3G05290		AtPNC1, PNC1	peroxisomal adenine nucleotide...		Lus10031510 [exp]	14.5	0.9179
AT2G43320			S-adenosyl-L-methionine-depend...		Lus10015953 [exp]	14.8	0.9163
AT5G18610			Protein kinase superfamily pro...		Lus10033966 [exp]	16.2	0.8933
AT2G01490			phytanoyl-CoA dioxygenase (Phy...		Lus10007925 [exp]	16.4	0.9069
AT4G22750			DHHC-type zinc finger family p...		Lus10015872 [exp]	18.2	0.8759
AT3G22630		PRCGB, PBD1	20S proteasome beta subunit D1...		Lus10021909 [exp]	18.6	0.8990
AT1G11380			PLAC8 family protein (.1)		Lus10002586 [exp]	19.0	0.9156

Compare expression of checked genes

Lus10038872 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.