Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52190 163 / 2e-51 Sugar isomerase (SIS) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014993 [exp] 224 / 1e-75 AT5G52190 272 / 9e-94 Sugar isomerase (SIS) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G140600 [exp] 186 / 2e-60 AT5G52190 283 / 6e-98 Sugar isomerase (SIS) family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10038873 pacid=23150663 polypeptide=Lus10038873 locus=Lus10038873.g ID=Lus10038873.BGIv1.0 annot-version=v1.0 ATGATTCCATCCACTCCACCAAAAGCTAACCAAACTCCTTCTCCCACAATGGAACCTTCGACCTCAACCTTCCACCAAGCCACCCAAATCTGCAACCAAA TCGCCGCCGTCTTCTCCAACCCCACCGGAAACCACCCTCCGCCTCTAGACACCTTGGTCTCCGCCGTTGCCGCCACATCGGCCCTGAACGGCAAGGTCTT CCTCTACGGAGTTGGCCGGGAGGGTCTGATGCTGAAAGCACTCTGTATGCGTCTATCCCACTTGGGCCTCTCTACCCACTTCGTGTTCGACATGACCACC CCTCCTATCTCCGCCGGCGACCTGCTCGTGGCATCCGCCGGTCCCGGACGATTCTCCACGGCGGACGCGCTCTGCTCCGTGGCGAGGGATAACGGTGGGG AGGTGTTGCTGCTGACTGGTCAGCCGGAGAAGGGTCCTGTGTTAAGTATGCTAGTAAGGTTTGTTATGTGCTGGCGATGA
AA sequence Show only first row Show all	>Lus10038873 pacid=23150663 polypeptide=Lus10038873 locus=Lus10038873.g ID=Lus10038873.BGIv1.0 annot-version=v1.0 MIPSTPPKANQTPSPTMEPSTSTFHQATQICNQIAAVFSNPTGNHPPPLDTLVSAVAATSALNGKVFLYGVGREGLMLKALCMRLSHLGLSTHFVFDMTT PPISAGDLLVASAGPGRFSTADALCSVARDNGGEVLLLTGQPEKGPVLSMLVRFVMCWR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G52190			Sugar isomerase (SIS) family p...		Lus10038873 [exp]	0	1
AT1G16880		ACR11	ACT domain repeats 11, uridyly...		Lus10034852 [exp]	4.9	0.8795
AT1G71480			Nuclear transport factor 2 (NT...		Lus10041048 [exp]	8.7	0.8728
AT3G23400		FIB4	fibrillin 4, Plastid-lipid ass...		Lus10021209 [exp]	10.8	0.8324
AT5G49320			Protein of unknown function (D...		Lus10016851 [exp]	15.3	0.8242
AT3G23700			Nucleic acid-binding proteins ...		Lus10022587 [exp]	15.8	0.8738
AT5G57040			Lactoylglutathione lyase / gly...		Lus10017158 [exp]	21.9	0.8614
AT3G44620			protein tyrosine phosphatases;...		Lus10043376 [exp]	25.5	0.7884
AT1G73885			unknown protein		Lus10005112 [exp]	28.5	0.8660
AT5G38520			alpha/beta-Hydrolases superfam...		Lus10003969 [exp]	31.3	0.8550
AT3G09050			unknown protein		Lus10035515 [exp]	32.7	0.8602

Compare expression of checked genes

Lus10038873 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.