Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62020 166 / 5e-50 HSF AT-HSFB2A ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR B2A, heat shock transcription factor B2A (.1) AT4G11660 138 / 2e-38 HSF AT-HSFB2B, HSFB2B HEAT SHOCK TRANSCRIPTION FACTOR B2B, winged-helix DNA-binding transcription factor family protein (.1) AT4G36990 116 / 5e-31 HSF AT-HSFB1, ATHSF4, HSF4, HsfB1 ARABIDOPSIS THALIANA HEAT SHOCK FACTOR 4, ARABIDOPSIS THALIANA CLASS B HEAT SHOCK FACTOR B1, heat shock factor 4 (.1) AT1G46264 111 / 2e-28 HSF SCZ, AT-HSFB4 SCHIZORIZA, heat shock transcription factor B4 (.1) AT1G32330 105 / 1e-25 HSF ATHSFA1D heat shock transcription factor A1D (.1) AT5G43840 102 / 1e-25 HSF AT-HSFA6A heat shock transcription factor A6A (.1) AT5G03720 102 / 9e-25 HSF AT-HSFA3 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A3, heat shock transcription factor A3 (.1) AT4G17750 101 / 3e-24 HSF ATHSFA1A, ATHSF1, HSF1 ARABIDOPSIS THALIANA CLASS A HEAT SHOCK FACTOR 1A, ARABIDOPSIS THALIANA HEAT SHOCK FACTOR 1, heat shock factor 1 (.1) AT3G63350 97 / 1e-23 HSF AT-HSFA7B HEAT SHOCK TRANSCRIPTION FACTOR A7B, winged-helix DNA-binding transcription factor family protein (.1) AT3G02990 99 / 2e-23 HSF ATHSFA1E heat shock transcription factor A1E (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014994 [exp] 330 / 5e-114 AT5G62020 259 / 2e-85 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR B2A, heat shock transcription factor B2A (.1) Lus10008007 [exp] 166 / 3e-49 AT4G11660 306 / 3e-102 HEAT SHOCK TRANSCRIPTION FACTOR B2B, winged-helix DNA-binding transcription factor family protein (.1) Lus10024508 [exp] 157 / 2e-45 AT4G11660 308 / 3e-102 HEAT SHOCK TRANSCRIPTION FACTOR B2B, winged-helix DNA-binding transcription factor family protein (.1) Lus10042646 [exp] 123 / 2e-32 AT1G46264 308 / 8e-103 SCHIZORIZA, heat shock transcription factor B4 (.1) Lus10001133 [exp] 121 / 1e-31 AT1G46264 319 / 4e-107 SCHIZORIZA, heat shock transcription factor B4 (.1) Lus10011065 [exp] 118 / 3e-30 AT1G32330 441 / 5e-152 heat shock transcription factor A1D (.1) Lus10000312 [exp] 117 / 4e-30 AT1G32330 437 / 1e-150 heat shock transcription factor A1D (.1) Lus10023866 [exp] 116 / 9e-30 AT5G03720 299 / 9e-98 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A3, heat shock transcription factor A3 (.1) Lus10019348 [exp] 113 / 1e-29 AT4G36990 254 / 3e-84 ARABIDOPSIS THALIANA HEAT SHOCK FACTOR 4, ARABIDOPSIS THALIANA CLASS B HEAT SHOCK FACTOR B1, heat shock factor 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G138900 [exp] 179 / 4e-55 AT5G62020 230 / 2e-74 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR B2A, heat shock transcription factor B2A (.1) Potri.015G141100 [exp] 162 / 1e-48 AT5G62020 233 / 8e-76 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR B2A, heat shock transcription factor B2A (.1) Potri.001G108100 [exp] 153 / 2e-44 AT4G11660 285 / 2e-94 HEAT SHOCK TRANSCRIPTION FACTOR B2B, winged-helix DNA-binding transcription factor family protein (.1) Potri.002G124800 [exp] 130 / 2e-35 AT1G46264 353 / 7e-121 SCHIZORIZA, heat shock transcription factor B4 (.1) Potri.014G027100 [exp] 127 / 4e-34 AT1G46264 335 / 9e-114 SCHIZORIZA, heat shock transcription factor B4 (.1) Potri.001G273700 [exp] 123 / 1e-33 AT1G46264 251 / 2e-82 SCHIZORIZA, heat shock transcription factor B4 (.1) Potri.009G068000 [exp] 119 / 4e-32 AT1G46264 258 / 4e-85 SCHIZORIZA, heat shock transcription factor B4 (.1) Potri.016G056500 [exp] 115 / 5e-31 AT2G41690 218 / 1e-71 HEAT SHOCK TRANSCRIPTION FACTOR B3, heat shock transcription factor B3 (.1) Potri.007G043800 [exp] 116 / 6e-31 AT4G36990 241 / 3e-79 ARABIDOPSIS THALIANA HEAT SHOCK FACTOR 4, ARABIDOPSIS THALIANA CLASS B HEAT SHOCK FACTOR B1, heat shock factor 4 (.1) Potri.003G095000 [exp] 113 / 2e-28 AT1G32330 375 / 2e-125 heat shock transcription factor A1D (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00447 [flax] [poplar] HSF_DNA-bind HSF-type DNA-binding
Representative CDS sequence Show only first row Show all	>Lus10038874 pacid=23150539 polypeptide=Lus10038874 locus=Lus10038874.g ID=Lus10038874.BGIv1.0 annot-version=v1.0 ATGCCTCCTCCGACACCGGACCAAACCGGAGAGGCTGGCGGAGTAACTCCACAGCTCGAATCTCAGAAATCCCTCCCAACTCCCTTCCTAACCAAGACCT ACCAGCTCGTCGACGACTCCGCAATCGACGACGTCATCTCCTGGACCGACGACGGATCCAGCTTCGTCGTCTGGAACCCCACCGTCTTCGCCAGAGACAT CCTCCCCCAACACTTCAAGCACAACAACTTCTCCAGCTTCGTCCGCCAATTGAACACTTACGCGGAAGCTAGCTCCAGCTGCGGCGGCTCAATCGGCTTC TCCCGGTGCAACCGCGCCCTGATATCGCCGTCGAATTCGGGGGAAGAGCAGGTCGGTTCGGCGACGTCGAACTCTCCTTCGCGATTCGGGACGGCGGCGG AGCAGCTGCAGGACGAGAACGAGAGGCTGCGGAGGGAAAACGCCCAGCTGAACAAGGAGCTGGTCGAGATGAAGAGGCTCTGCAACAACATATTCTCCCT CGTCTCGAGCTACTCCTCCATCAGTGATACCAATCATCAACCGCCTGCGGCAGCGGCGATGCTGGATCTGATGCCACCGGCGAAGGAGGAAGGGAGTCAA GGGACCAGCAGCGGCGCGAGGATCTTCGGAGTGGCGATTGGCGCGAAGAAGAGAGAAAGGGAAGGAGGAGAGGAGGATGAGTCGACAGAGCTGCAGCTTC AGCCGCCGGGGAGTGAGGAGGTGGTGAAATCGGAGCCGGCGGAGGCGACAGCGACGCCGTGGATGAAACAATGTCATAGAAGTAATCAGAGGGTGTGTAA TTAA
AA sequence Show only first row Show all	>Lus10038874 pacid=23150539 polypeptide=Lus10038874 locus=Lus10038874.g ID=Lus10038874.BGIv1.0 annot-version=v1.0 MPPPTPDQTGEAGGVTPQLESQKSLPTPFLTKTYQLVDDSAIDDVISWTDDGSSFVVWNPTVFARDILPQHFKHNNFSSFVRQLNTYAEASSSCGGSIGF SRCNRALISPSNSGEEQVGSATSNSPSRFGTAAEQLQDENERLRRENAQLNKELVEMKRLCNNIFSLVSSYSSISDTNHQPPAAAAMLDLMPPAKEEGSQ GTSSGARIFGVAIGAKKREREGGEEDESTELQLQPPGSEEVVKSEPAEATATPWMKQCHRSNQRVCN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G11660	HSF	AT-HSFB2B, HSFB...	HEAT SHOCK TRANSCRIPTION FACTO...		Lus10038874 [exp]	0	1
AT5G41560			unknown protein		Lus10028758 [exp]	1.4	0.8566
AT4G35220			Cyclase family protein (.1)		Lus10019822 [exp]	7.7	0.8438
AT5G49230		HRB1	HYPERSENSITIVE TO RED AND BLUE...		Lus10017097 [exp]	8.5	0.8470
AT2G46410	MYB	CPC	CAPRICE, Homeodomain-like supe...		Lus10018366 [exp]	10.2	0.8334
AT4G18930			RNA ligase/cyclic nucleotide p...		Lus10029278 [exp]	11.2	0.8364
AT3G07560		APM2, PEX13	ABERRANT PEROXISOME MORPHOLOGY...		Lus10016082 [exp]	13.4	0.8305
AT1G17455		ELF4-L4	ELF4-like 4 (.1.2)		Lus10000371 [exp]	13.7	0.8237
AT1G30090			Galactose oxidase/kelch repeat...		Lus10028121 [exp]	14.1	0.8480
AT1G55915			zinc ion binding (.1)		Lus10035762 [exp]	15.0	0.8063
AT5G49230		HRB1	HYPERSENSITIVE TO RED AND BLUE...		Lus10037819 [exp]	15.5	0.8446

Compare expression of checked genes

Lus10038874 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.