Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07280 1140 / 0 EXS, EMS1 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) AT4G20140 577 / 0 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT5G63930 503 / 5e-158 Leucine-rich repeat protein kinase family protein (.1) AT2G01950 484 / 1e-150 VH1, BRL2 VASCULAR HIGHWAY 1, BRI1-like 2 (.1) AT1G17230 479 / 3e-149 Leucine-rich receptor-like protein kinase family protein (.1) AT1G35710 478 / 2e-148 Protein kinase family protein with leucine-rich repeat domain (.1) AT4G39400 469 / 2e-144 DWF2, CBB2, BIN1, BRI1, ATBRI1 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) AT1G55610 468 / 3e-144 BRL1 BRI1 like (.1.2) AT3G13380 458 / 6e-141 BRL3 BRI1-like 3 (.1) AT5G48940 439 / 7e-134 Leucine-rich repeat transmembrane protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014996 [exp] 2037 / 0 AT5G07280 1264 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10036251 [exp] 563 / 4e-179 AT4G20140 1495 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10038392 [exp] 517 / 3e-162 AT4G20140 1376 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10039132 [exp] 480 / 5e-149 AT2G01950 1503 / 0.0 VASCULAR HIGHWAY 1, BRI1-like 2 (.1) Lus10023323 [exp] 478 / 4e-148 AT5G46330 1055 / 0.0 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) Lus10038726 [exp] 470 / 3e-145 AT2G01950 1501 / 0.0 VASCULAR HIGHWAY 1, BRI1-like 2 (.1) Lus10033533 [exp] 465 / 6e-143 AT4G39400 1492 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10011386 [exp] 451 / 2e-137 AT3G47570 787 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10006817 [exp] 444 / 3e-135 AT4G39400 1356 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G141200 [exp] 1367 / 0 AT5G07280 1347 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) Potri.012G139000 [exp] 1362 / 0 AT5G07280 1377 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) Potri.011G169600 [exp] 498 / 4e-155 AT1G55610 1500 / 0.0 BRI1 like (.1.2) Potri.001G472900 [exp] 488 / 4e-151 AT1G55610 1485 / 0.0 BRI1 like (.1.2) Potri.004G065400 [exp] 479 / 7e-149 AT5G46330 1176 / 0.0 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) Potri.010G101100 [exp] 471 / 1e-145 AT2G01950 1510 / 0.0 VASCULAR HIGHWAY 1, BRI1-like 2 (.1) Potri.003G174900 [exp] 468 / 4e-145 AT2G33170 1348 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.008G140500 [exp] 469 / 5e-145 AT2G01950 1535 / 0.0 VASCULAR HIGHWAY 1, BRI1-like 2 (.1) Potri.002G258400 [exp] 469 / 3e-144 AT1G35710 681 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.001G053400 [exp] 464 / 2e-143 AT2G33170 1311 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10038875 pacid=23150365 polypeptide=Lus10038875 locus=Lus10038875.g ID=Lus10038875.BGIv1.0 annot-version=v1.0 ATGGCGACAATTCACACCCTTCTACTTCTCTCCATCTTCTTCCTCTTCACAGTCCACCAACCCATCGTTTCCATCTCAAACCCAGATCTTCAAACCCTCT CTTCCTTCAAAACCTCCTTCCAAACCCCAAAATCCCTTTCATCGTGGAACGATTCCTCCCCTCTGTGCAGCTGGGTCGGTGTCACTTGCCGACTCGGTCG AGTCACCTCACTCTCACTCCCCTCCTCCTCACTCTCCGGCCACATCCCCACTTCCCTCTCCTCCCTAACCCACCTCTTTGAACTCTCCCTGTCTCAAAAC CACCTCACCGGCGAAATCCCGCCGGCGATCGGGAATCTAACCACCCTCACCACTCTCGACCTCTCCGGAAATTCCCTCACCGGAAAAATCCCGCTTGAGA TCGGAAATTTAAAAAACCTCGTCACTCTCGACCTCTCCGGAAACTCGCTCGCCGGTGAAATACCGCCGGAGCTCGGCGGACTGAACGCGTTGAAGTTTCT AGACCTCAGCAGCAACCTCATATCCGGCTCCCTTCCTGGCGAGATTTTCCTCAAGCTTCATCAGCTGATCTCTTTAGACATCTCCAACAACTCGTTCACC GGCTCAATCCCTCCCGAAATAGGTAACCTCAAAAACCTAATCGATCTCTACATCGGAACCAACTCCTTCTCCGGCAGAATCCCGCCGGAGATCGGAAATT TAGTTCGCCTCCAGAGCTTTGTTTCTCCTTTATGTTCACTCGCCGGCCCTCTACCGGAGCAAATCTCGAATCTCACTTCATTAACGAAGCTCGATCTCTC TTACAACCCATTACGCTGCAAAATCCCTAAATCAATCGGCGAGCTGAAGAATTTGACAATGCTGAATCTAGCCTTCTCGGAGCTGAACGGAACAATCCCT AGAGAGTTAGGAAATTGCAAGAGCTTAAAGATTTTAACTTTGTCTTTCAACTCTCTGTCTGGAATTTTACCTGAAGAGCTCTCCGATTTGCCGCTGTTGA CATTTTTGGCGGAGAAGAATCACTTCTCCGGTCGTCTACCTTCCTGGATTTCAAAATGGGACTCGATTACATCGATTCTGCTGTCAGGAAACCGGTTCGA AGGACCGATTCCGAAGCAGCTTGGAAACTGTTCTTCCTTGGAGCATATCGGTTTAAGTGATAATTTGCTCACAGGTGAGATTCCTGAAGAGCTCTGCGAT TCGGTTTCGATCCAGGAAATCTATCTGATGGGGAACTTGTTAACCGGCCGGATCGATAATGGAGTGTTTTCAAAGTGTAGGAATTTGACTCGGCTTGTAT TGGATGACAACAAGCTGACCGGTTCAATTCCTGGTTACTTGACTGATCTTCCGTTGATGTTTCTCGATCTCGATTCGAACGATTTCTCCGGTACGATTCC GGTCAGGATTTGGAATTCCAGGACGTTGATGGAGTTCTCTGCTGGAAGGAACAGGCTTGAAGGTTCATTACCTGGAGAGATCGGAAAGGCTGCCGGTTTG GAAACGTTGGTACTGAACAACAATCAACTAAGTGGAGTTATTCCTGAGGAGATTGGTAATCTTACATCTTTATCCTTGCTGAACTTGAATTCGAATCATC TCGAAGGGAGTATTCCGTCCGAGATCGGAGAATGTAGCTCGTTAGCCACGTTGGATTTAGGAAACAACAGCCTCACCGGCTCTATCCCCGACGAGCTAGC TGATTTGAGCCAGATCCAGTGTTTGGTACTGTCCGATAACAGATTGTCAGGATCGATTCCGGACAGGGCTTCGTCGTCATACTTTCGACAGGCTAATGTG CCGGACTTGGTCTACCTTCAGCACCGTGGCGTACTCGATCTTTCGAATAACATGCTGACCGGTTCGATCCCGAGCGAGTTCGGTAATCTTGTTGTGGTAG TCGATCTCTTGCTGCAGAACAACATGCTCTCCGGGGAAATTCCGGCGACTCTTTCCAAGCTGACTAATCTCACCACATTGGATCTCTCGTCGAATCGGCT GACTGGTTCGATTCCGCCGCAGATCGGACGGTGTTCTAAGCTGCAAGGGTTGTACATTGGCAACAATCATCTCCAAGGAACGGTTCCGGCTACATTGGGA GGGTTGAGCAGCCTAGTGAAGCTGAACCTGACCGGTAACCAGTTACACGGATCGGTTCCTTCGACGGTTTCGAATTTGAAGCAGTTGAGCCACATGGATC TCAGCTACAACCAGTTGGAATCGGAGCTGCCTTCAACTCTATCCGAGATGACGAATTTGGTAGGGCTGTTTCTTCAGGGAAACAGGATTTCAGGTTCTCT GGATAAGGTTCTTTCAAATGCAACAAACTGGAGGGTTGAAAGGATGAATTTGAGTGACAATCTAATCGATGGAGCCATACCTTCTTCAATCGGGAATCTT TCGTTCTTGTCGGAATTAGATCTGTCAGGAAACAGCTTGACCGGAGAGATTCCTGTCGAGATGAGGAATCTTCTGCAACTTGAGTATCTTGACCTGTCAG GAAATAGACTAGATGGTCAGATTCCTGAAACTCTATGCAATCTGGTCAGCTTGATTCACCTCAACCTGTCAGGAAATGCTCTCGAAGGTCCCATTCCGAG AACAGGAATCTGCTCGAATTTGTCGAGATCTTCATTTTCATCATCATCGCCTTCATCATCAGCATCCTTATTCAAATTTAGGCAGGTCTACGGTGTGGTG ATTGGGTTGGTGGTCTTCAGCCTCGCGATGGCGTTCTATCTACGAAGATGCTTCGTCGCTTCAGGTAACAAGCTGAAGGACGTCGAGGATATGAAGCTGA AGAGCCTGATGATCACTGATCGAAGCCTTTATTTCGTTCCCGACAGCAAATCGAAGGAGGAGCCACTGAGCATAAATGTGGCAATGTTCCAGCAGCCATT ACTCAAAGTGACACTCAGCAACATCCTGGAAGGAACAAACAACTTCTCCAAGGCCAACATCATAGGAGATGGAGGATTCGGCACGGTCTACAAGGCGAAT CTCATCACTAAAGGGGGAGATTCAGTAGTGGTGGTAGCAGTGAAGAAGCTCAGCGAAGCAGCGTCGCAAGGAGACCGCGAATTCATGGCCGAAATGGAAA CCATAGGAAAGGTCAAACACAAGAACTTGGTCTCACTCTTGGGATACTGCTCACTAGGTGAGGAAAAGGTTCTTGTCTACGAGTACTTGGTCAACGGCAG CTTGGACACGTGGCTCAGGAGCAACAATTCGAGTTTGACCCCGTTGGACTGGCCCACGAGACTGAAGATCGCAGTAGGGTCAGCCCGCGGGCTGGCCTTC CTACACCACGGGTTCACACCTCACATCATCCACCGCGACGTGAAGTCCAGCAACATCTTGCTGGACTCGGATTTCGAAGCCAAAGTCGCCGACTTCGGCC TAGCAAGGCTAATCAGCGCCTACGAGACCCACGTGAGCACCGAGGTGGCGGGGACGTTCGGGTACATCCCGCCGGAGTACGGGCAGAGCGGGAGGGCCAC CACGAAAGGCGACGTGTACAGTTTCGGCGTGATACTTCTCGAGTTAGTCACCGGGAAGGAACCCACGGGCCCCGATTTCAAGATGGTCGAAGGTGGGAAC TTGGTGGGTTGGGTTTTGGGGAAGGTCAAGAAAGGTGCAGTGTTGGATGTTCTTGATAAGGATGTTCTTGATAAAAAAGTTGGTAGCAGTATGAAGCAGG TTTTGCAGGTTGCTGTGGGTTGCTTGGCCGAGAAGCCAGCGAGTAGGCCTAGCATGCGTGATGTTCTCGAGTCTTTGAAGAGGATAAGGGTTTGCAATAA GAATTAG
AA sequence Show only first row Show all	>Lus10038875 pacid=23150365 polypeptide=Lus10038875 locus=Lus10038875.g ID=Lus10038875.BGIv1.0 annot-version=v1.0 MATIHTLLLLSIFFLFTVHQPIVSISNPDLQTLSSFKTSFQTPKSLSSWNDSSPLCSWVGVTCRLGRVTSLSLPSSSLSGHIPTSLSSLTHLFELSLSQN HLTGEIPPAIGNLTTLTTLDLSGNSLTGKIPLEIGNLKNLVTLDLSGNSLAGEIPPELGGLNALKFLDLSSNLISGSLPGEIFLKLHQLISLDISNNSFT GSIPPEIGNLKNLIDLYIGTNSFSGRIPPEIGNLVRLQSFVSPLCSLAGPLPEQISNLTSLTKLDLSYNPLRCKIPKSIGELKNLTMLNLAFSELNGTIP RELGNCKSLKILTLSFNSLSGILPEELSDLPLLTFLAEKNHFSGRLPSWISKWDSITSILLSGNRFEGPIPKQLGNCSSLEHIGLSDNLLTGEIPEELCD SVSIQEIYLMGNLLTGRIDNGVFSKCRNLTRLVLDDNKLTGSIPGYLTDLPLMFLDLDSNDFSGTIPVRIWNSRTLMEFSAGRNRLEGSLPGEIGKAAGL ETLVLNNNQLSGVIPEEIGNLTSLSLLNLNSNHLEGSIPSEIGECSSLATLDLGNNSLTGSIPDELADLSQIQCLVLSDNRLSGSIPDRASSSYFRQANV PDLVYLQHRGVLDLSNNMLTGSIPSEFGNLVVVVDLLLQNNMLSGEIPATLSKLTNLTTLDLSSNRLTGSIPPQIGRCSKLQGLYIGNNHLQGTVPATLG GLSSLVKLNLTGNQLHGSVPSTVSNLKQLSHMDLSYNQLESELPSTLSEMTNLVGLFLQGNRISGSLDKVLSNATNWRVERMNLSDNLIDGAIPSSIGNL SFLSELDLSGNSLTGEIPVEMRNLLQLEYLDLSGNRLDGQIPETLCNLVSLIHLNLSGNALEGPIPRTGICSNLSRSSFSSSSPSSSASLFKFRQVYGVV IGLVVFSLAMAFYLRRCFVASGNKLKDVEDMKLKSLMITDRSLYFVPDSKSKEEPLSINVAMFQQPLLKVTLSNILEGTNNFSKANIIGDGGFGTVYKAN LITKGGDSVVVVAVKKLSEAASQGDREFMAEMETIGKVKHKNLVSLLGYCSLGEEKVLVYEYLVNGSLDTWLRSNNSSLTPLDWPTRLKIAVGSARGLAF LHHGFTPHIIHRDVKSSNILLDSDFEAKVADFGLARLISAYETHVSTEVAGTFGYIPPEYGQSGRATTKGDVYSFGVILLELVTGKEPTGPDFKMVEGGN LVGWVLGKVKKGAVLDVLDKDVLDKKVGSSMKQVLQVAVGCLAEKPASRPSMRDVLESLKRIRVCNKN

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G07280		EXS, EMS1	EXTRA SPOROGENOUS CELLS, EXCES...		Lus10038875 [exp]	0	1
AT1G64080		MAKR2	MEMBRANE-ASSOCIATED KINASE REG...		Lus10028754 [exp]	2.2	0.9826
AT3G60670			PLATZ transcription factor fam...		Lus10015881 [exp]	2.4	0.9817
AT3G13960	GRF	ATGRF5	growth-regulating factor 5 (.1...		Lus10033441 [exp]	4.2	0.9768
AT2G45480	GRF	ATGRF9	growth-regulating factor 9 (.1...		Lus10009234 [exp]	5.7	0.9753
AT5G48090		ELP1	EDM2-like protein1 (.1.2)		Lus10002268 [exp]	7.7	0.9750
AT3G58690			Protein kinase superfamily pro...		Lus10017647 [exp]	8.5	0.9564
AT2G18350	ZF_HD	ATHB24, ZHD6	ZINC FINGER HOMEODOMAIN 6, hom...		Lus10007147 [exp]	10.4	0.9705
AT2G02540	ZF_HD	ATHB21, ZFHD4, ...	ZINC FINGER HOMEODOMAIN 3, ZIN...		Lus10038135 [exp]	11.0	0.9734
AT2G45480	GRF	ATGRF9	growth-regulating factor 9 (.1...		Lus10038002 [exp]	11.5	0.9747
					Lus10000191 [exp]	12.0	0.9632

Compare expression of checked genes

Lus10038875 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.