Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61150 293 / 2e-92 HD HD-GL2-1, HDG1 HOMEODOMAIN-GLABRA2 1, homeodomain GLABROUS 1 (.1) AT5G52170 275 / 5e-87 HD HDG7 homeodomain GLABROUS 7 (.1) AT4G04890 275 / 4e-86 HD PDF2 protodermal factor 2 (.1) AT4G00730 274 / 2e-85 HD AHDP, ANL2 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) AT4G21750 254 / 4e-78 HD ATML1 MERISTEM LAYER 1, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) AT1G05230 243 / 2e-74 HD HDG2 homeodomain GLABROUS 2 (.1.2.3.4) AT4G25530 242 / 3e-74 HD HDG6, FWA HOMEODOMAIN GLABROUS 6, FLOWERING WAGENINGEN (.1) AT1G79840 221 / 4e-66 HD GL2 GLABRA 2, HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain (.1.2) AT1G17920 214 / 1e-63 HD HDG12 homeodomain GLABROUS 12 (.1) AT1G73360 211 / 2e-62 HD ATHDG11, HDG11, EDT1 ENHANCED DROUGHT TOLERANCE 1, homeodomain GLABROUS 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014997 [exp] 538 / 0 AT4G00730 559 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Lus10031933 [exp] 421 / 3e-144 AT3G61150 410 / 1e-133 HOMEODOMAIN-GLABRA2 1, homeodomain GLABROUS 1 (.1) Lus10025940 [exp] 369 / 1e-122 AT3G61150 504 / 1e-168 HOMEODOMAIN-GLABRA2 1, homeodomain GLABROUS 1 (.1) Lus10027437 [exp] 313 / 9e-101 AT3G61150 715 / 0.0 HOMEODOMAIN-GLABRA2 1, homeodomain GLABROUS 1 (.1) Lus10005759 [exp] 312 / 2e-100 AT3G61150 706 / 0.0 HOMEODOMAIN-GLABRA2 1, homeodomain GLABROUS 1 (.1) Lus10005758 [exp] 280 / 2e-89 AT3G61150 419 / 3e-137 HOMEODOMAIN-GLABRA2 1, homeodomain GLABROUS 1 (.1) Lus10006765 [exp] 251 / 2e-77 AT4G21750 1152 / 0.0 MERISTEM LAYER 1, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Lus10018359 [exp] 245 / 3e-77 AT4G04890 805 / 0.0 protodermal factor 2 (.1) Lus10020059 [exp] 248 / 2e-76 AT4G21750 1130 / 0.0 MERISTEM LAYER 1, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G154700 [exp] 301 / 2e-95 AT4G00730 1057 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Potri.012G139300 [exp] 290 / 4e-92 AT4G00730 838 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Potri.014G075200 [exp] 289 / 6e-91 AT4G00730 1045 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Potri.015G141800 [exp] 284 / 9e-90 AT4G00730 829 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Potri.004G020400 [exp] 261 / 4e-81 AT4G04890 1185 / 0.0 protodermal factor 2 (.1) Potri.002G230200 [exp] 256 / 5e-79 AT1G05230 1159 / 0.0 homeodomain GLABROUS 2 (.1.2.3.4) Potri.011G025000 [exp] 252 / 9e-78 AT4G21750 1164 / 0.0 MERISTEM LAYER 1, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Potri.014G152000 [exp] 252 / 2e-77 AT1G05230 1179 / 0.0 homeodomain GLABROUS 2 (.1.2.3.4) Potri.012G038500 [exp] 226 / 4e-68 AT1G73360 920 / 0.0 ENHANCED DROUGHT TOLERANCE 1, homeodomain GLABROUS 11 (.1) Potri.003G052400 [exp] 226 / 6e-68 AT1G79840 948 / 0.0 GLABRA 2, HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0209 [flax] [poplar] Bet_v_1_like PF01852 [flax] [poplar] START START domain
Representative CDS sequence Show only first row Show all	>Lus10038876 pacid=23150462 polypeptide=Lus10038876 locus=Lus10038876.g ID=Lus10038876.BGIv1.0 annot-version=v1.0 ATGGATCTCGCGCTCGACACGAAATGGCCGGATGGGTCGAGTTCGAGCACCGGACCTTCTAGCATGAGACTCCCTTCTGGATGTGTCATAGAGGACTTGG GAAATGGCTGTTCTAAGGTGATATGGGTGGAGAATTGGTTGTACGACGAGAACTCGGTGAACCCTGTGATGCGACCGGTGGTGAGTTCGGGTGTGAGTTT CGGAGCTAAAAGGTGGATCGCCACGCTGCAGAGATACTGCGAGTCAGTCGCAATTCTCATCGCTTCGGCTAATTTGCCCCGAGACCCTTCGATTACCGAA GCCGGGAAGAAGAGCTTATTGAAGTTGTCCGAAAGGATGATCAACCTCTACTGCGGAGGAATCTCGGTTGATTCCTTTCCCTCGAAATGGGAGACGCCAG TGCCGATGAATTCGAGTGATCATTACGTGAGGATCGCAATGAGAAAGAACTCGGCCGAGCCAGGGGCCACATTAGGAGTTGCTTTGACTGCCTCGACCTC AATGTGGCTCCCCGTGTCACGGAGGATGCTGTTCGAGTTCCTAGCAAACGGTGCGACGAGGAAGAATTGGGATGTTCTGGCTAATGGGGGCACAATGACG GAGTTGGTTCATCTCGCCAAGACTCATATTCATAAGAACTCGATCTCCGTGCTTCGCGCTTCGGGCTATGGTGGTGGCAATGGAGATTCATTGATCCTCC AAGAAATGTGGAACGACGAGTCATCGTCCGTGCTGGTGTACGCACCGGTGGACACACAACCGATGGAGCTGGTGATGAGCGGAGGAGACAGCAGTTTCGT GGGTTTATTGCCATCGGGGTTCGCCATCTTCCCCGATGGCAGCGATGGCGTTGATGATGGTACCGGTATTGGTAGCGGTCGGGGATGCATCATGACAATA GGATTACAACTACTGGTGAGCAAAGTTCCGACGACGAGGGTGCGAAGGAAGTCGGTCGAGACTCTGACCAGCCTCCTGTCGTGCACTATCCAACGTATCA AGAACGCCTTTCAAGTCTCGTGA
AA sequence Show only first row Show all	>Lus10038876 pacid=23150462 polypeptide=Lus10038876 locus=Lus10038876.g ID=Lus10038876.BGIv1.0 annot-version=v1.0 MDLALDTKWPDGSSSSTGPSSMRLPSGCVIEDLGNGCSKVIWVENWLYDENSVNPVMRPVVSSGVSFGAKRWIATLQRYCESVAILIASANLPRDPSITE AGKKSLLKLSERMINLYCGGISVDSFPSKWETPVPMNSSDHYVRIAMRKNSAEPGATLGVALTASTSMWLPVSRRMLFEFLANGATRKNWDVLANGGTMT ELVHLAKTHIHKNSISVLRASGYGGGNGDSLILQEMWNDESSSVLVYAPVDTQPMELVMSGGDSSFVGLLPSGFAIFPDGSDGVDDGTGIGSGRGCIMTI GLQLLVSKVPTTRVRRKSVETLTSLLSCTIQRIKNAFQVS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G61150	HD	HD-GL2-1, HDG1	HOMEODOMAIN-GLABRA2 1, homeodo...		Lus10038876 [exp]	0	1
AT1G66230	MYB	ATMYB20	myb domain protein 20 (.1)		Lus10004042 [exp]	3.9	1.0000
					Lus10011962 [exp]	5.5	1.0000
AT2G20340			Pyridoxal phosphate (PLP)-depe...		Lus10012601 [exp]	6.7	1.0000
AT3G15720			Pectin lyase-like superfamily ...		Lus10040604 [exp]	7.4	0.7543
					Lus10022805 [exp]	7.7	1.0000
AT5G05530			RING/U-box superfamily protein...		Lus10024629 [exp]	8.7	1.0000
AT1G29460			SAUR-like auxin-responsive pro...		Lus10020430 [exp]	9.2	0.9872
AT2G15220			Plant basic secretory protein ...		Lus10026579 [exp]	9.5	1.0000
AT2G36620		RPL24A	ribosomal protein L24 (.1)		Lus10014637 [exp]	9.9	1.0000
					Lus10006919 [exp]	10.7	0.9755

Compare expression of checked genes

Lus10038876 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.