Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G04630 209 / 8e-71 NRPE6B, NRPB6B RNA polymerase Rpb6 (.1) AT5G51940 208 / 2e-70 NRPE6A, NRPD6A, NRPB6A RNA polymerase Rpb6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015000 [exp] 284 / 2e-100 AT2G04630 209 / 9e-71 RNA polymerase Rpb6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G138800 [exp] 239 / 1e-82 AT5G51940 197 / 7e-66 RNA polymerase Rpb6 (.1) Potri.012G136900 [exp] 199 / 5e-67 AT5G51940 210 / 4e-71 RNA polymerase Rpb6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01192 [flax] [poplar] RNA_pol_Rpb6 RNA polymerase Rpb6
Representative CDS sequence Show only first row Show all	>Lus10038878 pacid=23150251 polypeptide=Lus10038878 locus=Lus10038878.g ID=Lus10038878.BGIv1.0 annot-version=v1.0 ATGGCGGACGACGATTACAACGAAATGGACATGGGATACGAGGACGAGCCAGCTGAGCCCGATGTCGAGGAAGGAGCCGAACCAGAGGCGGATAACGAGA ACGGCGAGGATGTCACAGGGGAACCCATTGAAACGGATGACAGGGGGGATCCGGATGCAGTGGAGAGATCAGCTCGGAAGACGTCCAAGTATATGACCAA GTACGAGCGTGCCAGGATTTTGGGGACCCGGGCTCTGCAGATCAGCATGAATGCTCCTGTCATGGTGGAGTTGGAGGGTGAGACTGATCCATTGGAGATC GCCATGAAGGAGCTTCGACAGCGAAAGATTCCTTTCACCATCCGCCGGTACCTGCCTGATGGAAGCTACGAAGACTGGGGAGTCGACGAGCTGATCGTCG AAGACTCGTGGAAGAGGCAGGTCGGAGGGGACTAA
AA sequence Show only first row Show all	>Lus10038878 pacid=23150251 polypeptide=Lus10038878 locus=Lus10038878.g ID=Lus10038878.BGIv1.0 annot-version=v1.0 MADDDYNEMDMGYEDEPAEPDVEEGAEPEADNENGEDVTGEPIETDDRGDPDAVERSARKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEI AMKELRQRKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G04630		NRPE6B, NRPB6B	RNA polymerase Rpb6 (.1)		Lus10038878 [exp]	0	1
AT2G04630		NRPE6B, NRPB6B	RNA polymerase Rpb6 (.1)		Lus10015000 [exp]	2.2	0.9248
AT5G56670			Ribosomal protein S30 family p...		Lus10017473 [exp]	3.7	0.9175
AT5G12080		ATMSL10, MSL10	mechanosensitive channel of sm...		Lus10011954 [exp]	5.1	0.8441
AT2G35736			unknown protein		Lus10028935 [exp]	8.9	0.8653
AT4G29430		RPS15AE	ribosomal protein S15A E (.1)		Lus10000975 [exp]	9.9	0.8953
AT5G40080			Mitochondrial ribosomal protei...		Lus10003002 [exp]	12.4	0.8802
					Lus10027105 [exp]	13.1	0.8046
AT4G20150			unknown protein		Lus10036250 [exp]	13.2	0.8770
AT3G10090			Nucleic acid-binding, OB-fold-...		Lus10016222 [exp]	13.6	0.8922
AT3G07590			Small nuclear ribonucleoprotei...		Lus10028022 [exp]	16.0	0.8606

Compare expression of checked genes

Lus10038878 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.