Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00755 142 / 1e-39 F-box family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015001 [exp] 404 / 9e-142 AT4G00755 273 / 8e-89 F-box family protein (.1.2) Lus10036561 [exp] 187 / 8e-57 AT4G00755 323 / 5e-109 F-box family protein (.1.2) Lus10041367 [exp] 183 / 1e-55 AT4G00755 306 / 4e-102 F-box family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G153900 [exp] 204 / 1e-63 AT4G00755 311 / 3e-104 F-box family protein (.1.2) Potri.014G076300 [exp] 197 / 9e-61 AT4G00755 352 / 7e-120 F-box family protein (.1.2) Potri.014G076200 [exp] 92 / 5e-23 AT4G00755 95 / 6e-24 F-box family protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10038879 pacid=23150372 polypeptide=Lus10038879 locus=Lus10038879.g ID=Lus10038879.BGIv1.0 annot-version=v1.0 ATGGGAATTGGGTTCGGGTTCGATCAGCAGACCGGTTCCAGGTTTCGGTCGGATTCGATGATGCAAGCAAGGGAGAAATGCGGCAGCGACTTTATGCAGT GGCTGGGAGTCGACATGTCGATTCAGGTTCTGATGCATTTGGACGACCCGTCCGACCTGGTTCACATCTGCGCCGTTTCGAGCTCGTGGCGACAATTCGT GATTGAGCATTGCATCTGCAAGAAGCTCCTGTTGAGGAAGTTTCCGGCGATGTGTGGCAACACGAATCTCGTGGAGGACGACAATCTGATCGAGCCGGTC GATACGAGTGGTGGCGGTGGCGATACGAGATGGGAAAGGTTGAAGAGGAACCATAAGGTTTATGCATTTCTAGCTGGTGGACTTTCGCCAGTTACGGTGA AGGAGTGCATTTCGGAGGCAATATGTGCATCGAGCACGGACAATTACCCGGAAGAGACCATCCAGAACACATTGCAGTCGAGGGATCGAGTCGAGAGTCA TCGAGCTGACTATTGGTCAAGTAAAGGGCAAGCTCATGCTGATGTTCCTGAGAGATTGGTGTACAAGTTGGCTTCAAATCTCTGCCTCGTGTCCGAAATC CACGTCCAGGCTTTCCAAGGTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNACCTGCTTGCGGGAGTTAAATTTCCCGGACCCGGTTCTCTGCATCGGAGGTATCTTGCAGATCAAGCTGCTCGGTCGAGTCCAGCGACAAGAAATCGA TGGTCTATACTACATTTGGTGTGTGCTCTTTTGCTCAATGTCGCGATCTTTTGCTTAA
AA sequence Show only first row Show all	>Lus10038879 pacid=23150372 polypeptide=Lus10038879 locus=Lus10038879.g ID=Lus10038879.BGIv1.0 annot-version=v1.0 MGIGFGFDQQTGSRFRSDSMMQAREKCGSDFMQWLGVDMSIQVLMHLDDPSDLVHICAVSSSWRQFVIEHCICKKLLLRKFPAMCGNTNLVEDDNLIEPV DTSGGGGDTRWERLKRNHKVYAFLAGGLSPVTVKECISEAICASSTDNYPEETIQNTLQSRDRVESHRADYWSSKGQAHADVPERLVYKLASNLCLVSEI HVQAFQGXXXXXXXXXXXXXXXXXXXXXXXXXXXTCLRELNFPDPVLCIGGILQIKLLGRVQRQEIDGLYYIWCVLFCSMSRSFA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G00755			F-box family protein (.1.2)		Lus10038879 [exp]	0	1
AT5G06460		ATUBA2 ,UBA 2	ARABIDOPSIS THALIANA UBIQUITI...		Lus10031292 [exp]	10.0	0.6738
AT2G17030			F-box family protein with a do...		Lus10025100 [exp]	10.2	0.6729
AT5G27920			F-box family protein (.1)		Lus10011626 [exp]	12.0	0.5746
AT2G28310			Protein of unknown function (D...		Lus10021463 [exp]	13.6	0.5885
AT3G59910			Ankyrin repeat family protein ...		Lus10005306 [exp]	18.5	0.6257
AT3G61600		ATPOB1	POZ/BTB containin G-protein 1 ...		Lus10032340 [exp]	18.7	0.6663
AT5G41620			unknown protein		Lus10007858 [exp]	19.7	0.6239
AT4G16563			Eukaryotic aspartyl protease f...		Lus10008513 [exp]	29.1	0.6308
AT5G10050			NAD(P)-binding Rossmann-fold s...		Lus10004925 [exp]	33.2	0.6375
AT5G13030			unknown protein		Lus10031800 [exp]	36.7	0.5959

Compare expression of checked genes

Lus10038879 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.