Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62090 518 / 6e-172 SLK2 SEUSS-like 2 (.1.2) AT4G25515 465 / 7e-153 SLK3 SEUSS-like 3 (.1) AT4G25520 460 / 4e-150 SLK1 SEUSS-like 1 (.1) AT1G43850 342 / 4e-104 SEU SEUSS transcriptional co-regulator (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015002 [exp] 1033 / 0 AT5G62090 439 / 3e-143 SEUSS-like 2 (.1.2) Lus10042785 [exp] 351 / 3e-107 AT1G43850 721 / 0.0 SEUSS transcriptional co-regulator (.1.2) Lus10029756 [exp] 351 / 3e-107 AT1G43850 721 / 0.0 SEUSS transcriptional co-regulator (.1.2) Lus10028635 [exp] 337 / 2e-104 AT1G43850 518 / 5e-174 SEUSS transcriptional co-regulator (.1.2) Lus10018933 [exp] 285 / 3e-86 AT1G43850 435 / 1e-143 SEUSS transcriptional co-regulator (.1.2) Lus10006324 [exp] 276 / 6e-83 AT5G62090 277 / 9e-84 SEUSS-like 2 (.1.2) Lus10000198 [exp] 168 / 3e-45 AT5G62090 174 / 8e-48 SEUSS-like 2 (.1.2) Lus10029594 [exp] 140 / 2e-34 AT1G43850 140 / 9e-35 SEUSS transcriptional co-regulator (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G136100 [exp] 635 / 0 AT5G62090 536 / 1e-178 SEUSS-like 2 (.1.2) Potri.015G138500 [exp] 634 / 0 AT5G62090 551 / 0.0 SEUSS-like 2 (.1.2) Potri.003G121800 [exp] 387 / 2e-122 AT5G62090 357 / 1e-111 SEUSS-like 2 (.1.2) Potri.002G072900 [exp] 354 / 4e-108 AT1G43850 569 / 0.0 SEUSS transcriptional co-regulator (.1.2) Potri.005G186900 [exp] 348 / 1e-105 AT1G43850 612 / 0.0 SEUSS transcriptional co-regulator (.1.2) Potri.007G109400 [exp] 325 / 5e-98 AT1G43850 546 / 0.0 SEUSS transcriptional co-regulator (.1.2) Potri.013G089900 [exp] 96 / 1e-22 AT1G43850 172 / 6e-50 SEUSS transcriptional co-regulator (.1.2) Potri.005G058501 [exp] 95 / 2e-20 AT1G43850 158 / 2e-41 SEUSS transcriptional co-regulator (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10038880 pacid=23150357 polypeptide=Lus10038880 locus=Lus10038880.g ID=Lus10038880.BGIv1.0 annot-version=v1.0 ATGGCGTTAGCTCTGGAGAGCTACTTAGACTCCAGCCACCAAGGGGGGGTGCCTTCAATGGCACCATCTCGTGTGACTGGAGGGTTAGCCCAATCGTCCT CAAGTTCTGGAATTTTCTTTCAGGGGGATGGACACTCCCAGGCTGTAGCTAATTCTCACTTGAGCCAGTCGTTTGGAAACTCGTACAGTTCGATTCAAAG AACTGGACATCCCAACCTGGGTCCGGTGGTATCCGGGGACATGAATAATTCAGTTTTGAACAGTGTCGCTAATTCAGGGGCGGGTGTTGGGGCGAGTTCA GTTGTCACTGATGCGAATTCAGCATTCTCTGGAGGCCCTCGTCTGCAGAGAAGTGCCAGCATTAACACGGATCCGCGCATGCCTGCTTCACCTATGTCTT TTACGTCCAATAATATAAGCATCTCTGGCAATTCAGCTCTCGACGGTTCTTCAGTTGTGCAGCAGGGAAATCACCAGGAGTCTAATGCACAGCAGGTCCA TCATGGTCAGCTTCAACAACGAGGGGCTTCGAGTGCTACGTCTTTGCCCACAGGACAAACTGGGCAACTTTCCATGGGTGCACGGGCTCCCCCCGGGTCT TATCTTCCGGACCATAACTTATCACAGGTGCAGAAGAAGCCCCGGCTAGATATAAAGCAGGAAGACATTCTGCAGCAGCAAGTGTTGCACCAGTTGCTAC AGCGGCAGGATTCTATGCAGTTTCAAGGCCATAATCCACAGCTACAAAGTCTGCTTCAGCAGCAAAGACTCAGGCAGCAGCAACAAATTCTTCAATCGAT GCCACCAATGCAAAGAGCCCATTTGCAGCAACAGCAGCAGCTTCAGATGAGGCAGCAAATGCAACAACAGGCCATGCAGCCAGCTCCAGCCCCTGTGAAG CGTCCCTATGACGGGGGAGTATGTGCCCGCCGGATGATGCAGTACCTTTATCATCAGCGGCAGAGGCCAGCCGAAAATACTATTGCGTATTGGAGAAAAT TCGTAGCGGAGTACTATGCTCCTCGGGCAAAGAAAAGATGGTGCTTGTCATTATATGAAAATGTTGGGCATCATGCCCTTGGTGTATTTCCCCAAGCTGC AATGGAGGCATGGCAGTGTGACATCTGTGGTTCAAAGTCCGGAAGAGGATTCGAGGCAACTTACGATGTGTTACCGCGTCTAAATGAAATCAAGTTTGGG AGTGGTGTCATAGATGAGCTTTTATTTTTCGACTTGCCCCGTGAATCTAGATTGCCTTCTGGATTACTGATGCTGGAGTATGGCAAAACAGTTCAAGAGA GTGTGTATGAGCAACTCCGTGTTGTTCGGGAGGGTCAACTCCGTGTCATATTCACCCATGATTTGAAGATCTTATCGTGGGACTTCTGTGTACGACGCCA TGAAGAACTGCTTCCTCGAAGGGTTGTTGCTCCTCAGGTAAATCAGCTAGTACAGGTTGCACAGAAATGCCAAAGCACAATCTCCGAAAGTGGACCTGAT GGCGTTTCACAGCAGGATCTCCAAGCAAATAGCAATATGGTTGTGACGGCTGGGCGGCAGCTTGCTAAGAGTTTGGAGTTGCAATCATTGAATGATTTGG GATTCTCCAAACGATACGTTAGATGTTTGCAGATCTCTGAGGTTGTCAATAGCATGAAGGACTTGATTGATTTCTGCGGAGACCAAAAATCTGGGCCAAT AGATAGCCTGAAAAACTACCCTCGACACACCGATGCAGTTAAGCAGCTCCAGATGCAAAAGATGCAAGAGATGGAGCAGCTGGCGAACGCTCAGGGTCTA CCGTCCGATCGGAACACCCTCAATAAGCTTATGGCATTGTACCCCGGAATGAACAACGCCATGAACAGCAACAATCGAGGAGCTTTAAGCGGCCCGGCCC AGGCTGCATTGGCGCTCTCAAACTACCAGTCTATTCTTTCGAGGCAAAACTCGATGAATTCGAACTCGAGCTCACACCAACAAGAACAGCAGCAACCAAC TTCATCGTTCAACAATTCCCGCCGTAGCCCTTCTCCGAGTTTTCAAGGACCCAGTAATGCCGCTGCTGCTTTTGCATCGGGATCCGTCCAGAACTTACGG GGAAGAGGGTATCTACCTCCCCAGCAGTCGCTCCAACAGCAGCGTTCGTTGAGCTCTAATGGCTTACTTGCGCCTCAAGGCAGTAATCCGGCGGTGTTGC AACAGCAAATGATGCAGCACCTTCTGCATGACATGTCGAGTAACACCAACCGGGGAGGGAATAATCACTTGCAGCAGCCGCAGCCTTCGATTTCTGCACC AAACGGGTCAGGAGGAAGGAACGGTGTAGTTAACAAATCGGCAGCAAGTCCGGCCATGTCCGGAGGCGTTACCGGTCCTGCGCCACCAAGCCGGAGCAAC AGCTTCAAATCTGCTCCCGCTATGGCTCCTGCTGCTACCACCACCGAGACCAGCGATTCTTCTGCAGCTGGCGGGGGCGGTACGAGTGAGTACAATCATA ATAATCATAAGGCGGCGACCGTAGATCTTCCTCAGAACTTGCAGGATGATATTCAAGATATTCCGAGCGAGTTTACGGATACTGACTTTTTTAACAGCGA TTATGACTATGCTTGGAAAGCTTAG
AA sequence Show only first row Show all	>Lus10038880 pacid=23150357 polypeptide=Lus10038880 locus=Lus10038880.g ID=Lus10038880.BGIv1.0 annot-version=v1.0 MALALESYLDSSHQGGVPSMAPSRVTGGLAQSSSSSGIFFQGDGHSQAVANSHLSQSFGNSYSSIQRTGHPNLGPVVSGDMNNSVLNSVANSGAGVGASS VVTDANSAFSGGPRLQRSASINTDPRMPASPMSFTSNNISISGNSALDGSSVVQQGNHQESNAQQVHHGQLQQRGASSATSLPTGQTGQLSMGARAPPGS YLPDHNLSQVQKKPRLDIKQEDILQQQVLHQLLQRQDSMQFQGHNPQLQSLLQQQRLRQQQQILQSMPPMQRAHLQQQQQLQMRQQMQQQAMQPAPAPVK RPYDGGVCARRMMQYLYHQRQRPAENTIAYWRKFVAEYYAPRAKKRWCLSLYENVGHHALGVFPQAAMEAWQCDICGSKSGRGFEATYDVLPRLNEIKFG SGVIDELLFFDLPRESRLPSGLLMLEYGKTVQESVYEQLRVVREGQLRVIFTHDLKILSWDFCVRRHEELLPRRVVAPQVNQLVQVAQKCQSTISESGPD GVSQQDLQANSNMVVTAGRQLAKSLELQSLNDLGFSKRYVRCLQISEVVNSMKDLIDFCGDQKSGPIDSLKNYPRHTDAVKQLQMQKMQEMEQLANAQGL PSDRNTLNKLMALYPGMNNAMNSNNRGALSGPAQAALALSNYQSILSRQNSMNSNSSSHQQEQQQPTSSFNNSRRSPSPSFQGPSNAAAAFASGSVQNLR GRGYLPPQQSLQQQRSLSSNGLLAPQGSNPAVLQQQMMQHLLHDMSSNTNRGGNNHLQQPQPSISAPNGSGGRNGVVNKSAASPAMSGGVTGPAPPSRSN SFKSAPAMAPAATTTETSDSSAAGGGGTSEYNHNNHKAATVDLPQNLQDDIQDIPSEFTDTDFFNSDYDYAWKA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G62090		SLK2	SEUSS-like 2 (.1.2)		Lus10038880 [exp]	0	1
AT1G16560			Per1-like family protein (.1.2...		Lus10015006 [exp]	1.4	0.9074
AT5G62090		SLK2	SEUSS-like 2 (.1.2)		Lus10015002 [exp]	1.7	0.8970
AT5G49580			Chaperone DnaJ-domain superfam...		Lus10017085 [exp]	2.0	0.8824
AT3G26990			ENTH/VHS family protein (.1)		Lus10020327 [exp]	3.7	0.8589
AT3G17900			unknown protein		Lus10037215 [exp]	4.0	0.8988
AT3G21215			RNA-binding (RRM/RBD/RNP motif...		Lus10034844 [exp]	5.8	0.8343
AT5G20200			nucleoporin-related (.1)		Lus10043265 [exp]	7.7	0.8318
AT3G17470		ATCRSH	Ca2+-activated RelA/spot homol...		Lus10028191 [exp]	7.7	0.8365
AT5G24500			unknown protein		Lus10032937 [exp]	8.2	0.7949
AT4G01000			Ubiquitin-like superfamily pro...		Lus10010125 [exp]	11.5	0.8402

Compare expression of checked genes

Lus10038880 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.