Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02405 333 / 4e-114 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT5G42760 49 / 2e-06 Leucine carboxyl methyltransferase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015003 [exp] 629 / 0 AT4G02405 336 / 5e-115 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10032713 [exp] 49 / 2e-06 AT5G42760 467 / 2e-166 Leucine carboxyl methyltransferase (.1.2) Lus10000713 [exp] 43 / 0.0002 AT5G42760 458 / 9e-163 Leucine carboxyl methyltransferase (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G203900 [exp] 421 / 7e-149 AT4G02405 324 / 2e-110 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.002G260300 [exp] 54 / 3e-08 AT5G42760 483 / 9e-173 Leucine carboxyl methyltransferase (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF04072 [flax] [poplar] LCM Leucine carboxyl methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10038881 pacid=23150531 polypeptide=Lus10038881 locus=Lus10038881.g ID=Lus10038881.BGIv1.0 annot-version=v1.0 ATGGCACATATGGAATGTCTTCTCGGCTCGACTCCCTCACTCGCCATAGCCTTCCCGCCGTTTTCTGCTCCCAACTCCAGAAGACATCATCGTCGTCATC ATCATGGGTTGAAAGCCACGCTCACTTCCGAGACTGATCCGTTATTCCAATCCGCCATGAACTCAGCTTCCCTTCGCTTCCAGGAGACTCATCGGCCAGA GCCGTTACTGGTTGATCCATATGCTGGTTGCTTTGTTGACCCGAACATGCAGATGGGCTTGAAAAAGAACCCACATCCTTACTGCGTCGCGACCAAGTTC GTAGACGATAAATTGCTTCGAACCGTTCATCATATCGATGGACTTAAGCAGGTTGTTCTGTTAACCGATGGAATGGACACTCGGCCTTATCGACTGAACT GGCCTTCTTCTACCATGATCTTCGACGTATCCCCCGAACGGATATTCAACACGTCTGCCCAGAAGCTTCAAGGTGTCGGAGCTAAAATTCCGAGACATTG CTTACATGTACACGTACAGATGGAGTCCCCTGATATCGAAAAGGCCCTGCGCGCTAAAGGATTCAACGGTAACCTTTCCAGTATATGGGCATTGCAGGGA CTGCCGATTATGACTCTGGCAAGCTTTGAACAGATTCTGTACGTGGCTAGTAGCTTGGTGGTGAAAGGCAGTTCATTCATCGGTGAACTGCCAGCTTGGT TGTCCGAAACAGAAATCGGAGCCACCACCAAGCCAAGTACGAACAAGTGGATGAGCAAGCTGTTCATGAGCAACGGATTCAAGGTCGACACGATTGGATA CGACGAAGTTGCAACGAGTTTGGGCAAAGAACTCGAACCGGGAAGCCACAACAACATTCTGTTTGTTGCTGAACAGTTACGGTTTTCAGATGATCAGATG GAAACTTGGAGAAGAGAGTTTCAGAGGGTAGACGGTGAAGCTGATGAAGACGGATTTGACGAGCTCTAA
AA sequence Show only first row Show all	>Lus10038881 pacid=23150531 polypeptide=Lus10038881 locus=Lus10038881.g ID=Lus10038881.BGIv1.0 annot-version=v1.0 MAHMECLLGSTPSLAIAFPPFSAPNSRRHHRRHHHGLKATLTSETDPLFQSAMNSASLRFQETHRPEPLLVDPYAGCFVDPNMQMGLKKNPHPYCVATKF VDDKLLRTVHHIDGLKQVVLLTDGMDTRPYRLNWPSSTMIFDVSPERIFNTSAQKLQGVGAKIPRHCLHVHVQMESPDIEKALRAKGFNGNLSSIWALQG LPIMTLASFEQILYVASSLVVKGSSFIGELPAWLSETEIGATTKPSTNKWMSKLFMSNGFKVDTIGYDEVATSLGKELEPGSHNNILFVAEQLRFSDDQM ETWRREFQRVDGEADEDGFDEL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02405			S-adenosyl-L-methionine-depend...		Lus10038881 [exp]	0	1
AT1G16080			unknown protein		Lus10041625 [exp]	9.7	0.8621
AT4G25910		ATCNFU3, NFU3	NFU domain protein 3 (.1)		Lus10001439 [exp]	17.5	0.8581
AT3G61220		SDR1	short-chain dehydrogenase/redu...		Lus10014694 [exp]	19.6	0.8528
AT3G15470			Transducin/WD40 repeat-like su...		Lus10027670 [exp]	20.5	0.7959
AT5G06700		TBR	TRICHOME BIREFRINGENCE, Plant ...		Lus10021066 [exp]	21.9	0.8285
AT1G29390		COR413IM2, COR3...	COLD REGULATED 314 INNER MEMBR...		Lus10025378 [exp]	22.0	0.8526
AT4G02405			S-adenosyl-L-methionine-depend...		Lus10015003 [exp]	26.8	0.8465
AT3G09580			FAD/NAD(P)-binding oxidoreduct...		Lus10027764 [exp]	33.1	0.8457
					Lus10022598 [exp]	35.4	0.8353
AT1G29700			Metallo-hydrolase/oxidoreducta...		Lus10035042 [exp]	37.3	0.8412

Compare expression of checked genes

Lus10038881 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.