Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52060 285 / 3e-95 ATBAG1 BCL-2-associated athanogene 1 (.1) AT5G07220 275 / 1e-91 ATBAG3 BCL-2-associated athanogene 3 (.1) AT5G62100 267 / 7e-89 ATBAG2 BCL-2-associated athanogene 2 (.1.2.3) AT3G51780 143 / 7e-41 ATBAG4 BCL-2-associated athanogene 4 (.1) AT5G14360 90 / 1e-21 Ubiquitin-like superfamily protein (.1) AT5G40630 81 / 3e-18 Ubiquitin-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015004 [exp] 469 / 4e-168 AT5G52060 333 / 4e-114 BCL-2-associated athanogene 1 (.1) Lus10027420 [exp] 362 / 1e-125 AT5G52060 349 / 6e-120 BCL-2-associated athanogene 1 (.1) Lus10005772 [exp] 313 / 2e-106 AT5G52060 304 / 2e-102 BCL-2-associated athanogene 1 (.1) Lus10029598 [exp] 196 / 1e-61 AT5G52060 195 / 8e-61 BCL-2-associated athanogene 1 (.1) Lus10006328 [exp] 196 / 2e-61 AT5G52060 194 / 2e-60 BCL-2-associated athanogene 1 (.1) Lus10023279 [exp] 192 / 3e-60 AT5G07220 196 / 4e-62 BCL-2-associated athanogene 3 (.1) Lus10005051 [exp] 135 / 2e-36 AT3G51780 221 / 1e-69 BCL-2-associated athanogene 4 (.1) Lus10027822 [exp] 130 / 3e-35 AT3G51780 221 / 4e-71 BCL-2-associated athanogene 4 (.1) Lus10003393 [exp] 87 / 6e-20 AT3G51780 180 / 5e-56 BCL-2-associated athanogene 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G135500 [exp] 365 / 1e-126 AT5G52060 303 / 2e-101 BCL-2-associated athanogene 1 (.1) Potri.012G133400 [exp] 352 / 2e-121 AT5G52060 305 / 2e-102 BCL-2-associated athanogene 1 (.1) Potri.003G121500 [exp] 239 / 9e-78 AT5G52060 243 / 1e-78 BCL-2-associated athanogene 1 (.1) Potri.001G110300 [exp] 229 / 4e-73 AT5G52060 239 / 2e-76 BCL-2-associated athanogene 1 (.1) Potri.001G358200 [exp] 191 / 3e-59 AT5G07220 207 / 9e-66 BCL-2-associated athanogene 3 (.1) Potri.001G279500 [exp] 157 / 2e-46 AT3G51780 210 / 2e-67 BCL-2-associated athanogene 4 (.1) Potri.009G074300 [exp] 154 / 5e-45 AT3G51780 196 / 4e-62 BCL-2-associated athanogene 4 (.1) Potri.016G121200 [exp] 105 / 2e-26 AT3G51780 218 / 1e-70 BCL-2-associated athanogene 4 (.1) Potri.001G339100 [exp] 85 / 7e-20 AT5G14360 166 / 6e-53 Ubiquitin-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02179 [flax] [poplar] BAG BAG domain
Representative CDS sequence Show only first row Show all	>Lus10038882 pacid=23150537 polypeptide=Lus10038882 locus=Lus10038882.g ID=Lus10038882.BGIv1.0 annot-version=v1.0 ATGATGATGGGGATGAAGACTAACGGCGGCGGCGGAGATACCGCCGCCGGAGCAGAGTGGGAAGTCCGGCCTAGCGGGATGCTGGTACAGAAGCGGAACC CGGATTCCGACCACCAGTCAATTCCCCCACCGACAATCCGGGTCCGGGTCAAGTTCGGGTCAACGTACCACCAAATCAACATCAGCTCGCAAGCAACATT CGGGGAGGTGAAGAAGATGTTGACGGGGCCGACGGGGCTGCACCATTTAGACCAGAAGCTGATGTACAAGGACAAAGAGAGGGATTCGAAGGCGTTTCTG GATGTTGCAGGGGTGAAGGACAAGTCGAAAATGGTGGTTATGGAAGATCCGATTAGCCAGGAGAAGAGGTATCTGGAGATGAGGAAGAATGCTACCATGG AGAAGGCTTCCAAGTCGATTTCTCAGATTAGCTTGGAGGTTGATCGGCTTGCTGGAAGGGTGTCTGGTTTGGAGTCGGTGATTAGTAAAGGAGGGAAAGT GGAGGAGAAGCAAGTTCTTAGCTTGATTGAGCTGCTGATGAATGAGCTGTTGAAGTTGGATGGGATCATGGGTGATGGAGATGTCAAACTGCAGAGGAAA TTGCAGGTGAAGAGGGTACAGAAGTATGTCGAAACACTGGACATGTTGAAGGTCAAGAACTCCAACCTTTCCAATGGAAGCCAGAACAAATCGACACAGC ATAATCGCAAGCCATCCAATGGACACAGTAGATTAGCTCCCATTGATGAAGAACAGCACCAGCAGCAGCCTAAATCGAGGAATTCGAGTGGACCGCCAGT GGTTGGTACAACACAATGGGAAACATTCGATGCCACACCATCACCACAGCCGCCATTACCACAATCATCTGCCAACAACAACAACAACAGTTCAGCTCAT AACCAGCCAAAATTCCCGTGGGATTTCTTTGGTTGA
AA sequence Show only first row Show all	>Lus10038882 pacid=23150537 polypeptide=Lus10038882 locus=Lus10038882.g ID=Lus10038882.BGIv1.0 annot-version=v1.0 MMMGMKTNGGGGDTAAGAEWEVRPSGMLVQKRNPDSDHQSIPPPTIRVRVKFGSTYHQINISSQATFGEVKKMLTGPTGLHHLDQKLMYKDKERDSKAFL DVAGVKDKSKMVVMEDPISQEKRYLEMRKNATMEKASKSISQISLEVDRLAGRVSGLESVISKGGKVEEKQVLSLIELLMNELLKLDGIMGDGDVKLQRK LQVKRVQKYVETLDMLKVKNSNLSNGSQNKSTQHNRKPSNGHSRLAPIDEEQHQQQPKSRNSSGPPVVGTTQWETFDATPSPQPPLPQSSANNNNNSSAH NQPKFPWDFFG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G52060		ATBAG1	BCL-2-associated athanogene 1 ...		Lus10038882 [exp]	0	1
AT5G52060		ATBAG1	BCL-2-associated athanogene 1 ...		Lus10015004 [exp]	1.0	0.9481
AT5G22070			Core-2/I-branching beta-1,6-N-...		Lus10013361 [exp]	1.7	0.8945
AT4G22910		CCS52A1, FZR2	cell cycle switch protein 52 ...		Lus10024482 [exp]	2.0	0.8772
AT3G52020		SCPL39	serine carboxypeptidase-like 3...		Lus10039582 [exp]	4.9	0.9080
AT5G07740			actin binding (.1)		Lus10017556 [exp]	9.5	0.8709
AT1G62790			Bifunctional inhibitor/lipid-t...		Lus10024591 [exp]	11.0	0.8435
AT1G24470		ATKCR2, KCR2	beta-ketoacyl reductase 2 (.1)		Lus10011396 [exp]	12.6	0.7908
AT1G03900		ABCI18, ATNAP4	ATP-binding cassette I18, non-...		Lus10033908 [exp]	13.5	0.8564
AT3G07130		ATPAP15, PAP15	purple acid phosphatase 15 (.1...		Lus10011847 [exp]	14.2	0.7822
AT3G06590	bHLH	bHLH148, AIF2	basic helix-loop-helix (bHLH) ...		Lus10017065 [exp]	18.8	0.8323

Compare expression of checked genes

Lus10038882 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.