Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25500 177 / 9e-53 ATRSP40, AT-SRP40, ATRSP35, RS40, At-RS40 ARABIDOPSIS THALIANA ARGININE/SERINE-RICH SPLICING FACTOR 35, arginine/serine-rich splicing factor 40, arginine/serine-rich splicing factor 35 (.1.2.3.4) AT5G52040 173 / 6e-51 ATRSP41, RS41, At-RS41 arginine/serine-rich splicing factor 41, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) AT3G61860 167 / 5e-50 ATRSP31, At-RS31 arginine/serine-rich splicing factor 31, RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT2G46610 143 / 8e-41 RS31a, At-RS31a arginine/serine-rich splicing factor 31a, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT1G02840 63 / 4e-11 ATSRP34, SR1, SR34, At-SR34 Serine/Arginine-Rich Protein Splicing Factor 34, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) AT4G02430 61 / 9e-11 SR34b, At-SR34b Serine/Arginine-Rich Protein Splicing Factor 34b, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT1G09140 59 / 7e-10 ATSRP30.1, ATSRP30.2, SR30, At-SR30 Serine/Arginine-Rich Protein Splicing Factor 30, SERINE-ARGININE PROTEIN 30 (.1.2) AT2G37340 57 / 3e-09 RSZ33, ATRSZ33, RS2Z33, AT-RS2Z33 arginine/serine-rich zinc knuckle-containing protein 33 (.1.2.3) AT3G49430 56 / 7e-09 SRP34A, SR34a, At-SR34a Serine/Arginine-Rich Protein Splicing Factor 34a, SER/ARG-rich protein 34A (.1.2.3) AT3G53500 56 / 8e-09 RSZ32, RS2Z32, At-RS2Z arginine/serine-rich zinc knuckle-containing protein 32, RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.1), RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015005 [exp] 345 / 2e-112 AT5G52030 461 / 5e-156 TraB family protein (.1.2) Lus10030226 [exp] 155 / 4e-45 AT3G61860 320 / 8e-111 arginine/serine-rich splicing factor 31, RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10005986 [exp] 152 / 6e-44 AT3G61860 300 / 3e-103 arginine/serine-rich splicing factor 31, RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10007869 [exp] 67 / 2e-12 AT1G02840 308 / 1e-105 Serine/Arginine-Rich Protein Splicing Factor 34, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) Lus10003606 [exp] 66 / 3e-12 AT1G02840 299 / 5e-102 Serine/Arginine-Rich Protein Splicing Factor 34, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) Lus10008218 [exp] 67 / 4e-12 AT1G02840 228 / 3e-73 Serine/Arginine-Rich Protein Splicing Factor 34, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) Lus10015564 [exp] 66 / 6e-12 AT3G49430 324 / 6e-112 Serine/Arginine-Rich Protein Splicing Factor 34a, SER/ARG-rich protein 34A (.1.2.3) Lus10032940 [exp] 65 / 1e-11 AT3G49430 328 / 7e-113 Serine/Arginine-Rich Protein Splicing Factor 34a, SER/ARG-rich protein 34A (.1.2.3) Lus10020656 [exp] 59 / 2e-09 AT1G02840 297 / 2e-100 Serine/Arginine-Rich Protein Splicing Factor 34, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G153600 [exp] 214 / 3e-68 AT4G25500 264 / 7e-88 ARABIDOPSIS THALIANA ARGININE/SERINE-RICH SPLICING FACTOR 35, arginine/serine-rich splicing factor 40, arginine/serine-rich splicing factor 35 (.1.2.3.4) Potri.015G135800 [exp] 206 / 3e-63 AT4G25500 322 / 5e-108 ARABIDOPSIS THALIANA ARGININE/SERINE-RICH SPLICING FACTOR 35, arginine/serine-rich splicing factor 40, arginine/serine-rich splicing factor 35 (.1.2.3.4) Potri.012G133600 [exp] 186 / 6e-56 AT4G25500 316 / 2e-106 ARABIDOPSIS THALIANA ARGININE/SERINE-RICH SPLICING FACTOR 35, arginine/serine-rich splicing factor 40, arginine/serine-rich splicing factor 35 (.1.2.3.4) Potri.014G076600 [exp] 176 / 2e-53 AT4G25500 255 / 3e-84 ARABIDOPSIS THALIANA ARGININE/SERINE-RICH SPLICING FACTOR 35, arginine/serine-rich splicing factor 40, arginine/serine-rich splicing factor 35 (.1.2.3.4) Potri.002G175000 [exp] 151 / 6e-44 AT3G61860 291 / 8e-100 arginine/serine-rich splicing factor 31, RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.014G101800 [exp] 147 / 2e-42 AT3G61860 319 / 9e-111 arginine/serine-rich splicing factor 31, RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.002G205025 [exp] 66 / 5e-12 AT1G02840 272 / 1e-90 Serine/Arginine-Rich Protein Splicing Factor 34, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) Potri.014G129900 [exp] 64 / 2e-11 AT1G02840 272 / 5e-91 Serine/Arginine-Rich Protein Splicing Factor 34, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) Potri.015G004600 [exp] 61 / 2e-10 AT3G49430 303 / 1e-103 Serine/Arginine-Rich Protein Splicing Factor 34a, SER/ARG-rich protein 34A (.1.2.3) Potri.006G215200 [exp] 59 / 9e-10 AT2G37340 266 / 6e-89 arginine/serine-rich zinc knuckle-containing protein 33 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10038883 pacid=23150569 polypeptide=Lus10038883 locus=Lus10038883.g ID=Lus10038883.BGIv1.0 annot-version=v1.0 ATGAGGCCTATCTTTTGCGGAAACTTTGAGTATGATGCTCGCCAATCTGAGCTGGAGCGGCTTTTCAAACGTTATGGAAGGGTGGAAAGGATAGACATGA AGTCTGGATTTGCTTTCATATATATGGAAGATGAAAGAGATGCTGAGGATGCAATTCGAGGACTCGACCGCACAGAATTTGGCCGCAAGGGTCGCAGACT TCGTGTTGAATGGACAAAGCAAGAACGTGGCGCCAGAGGGGTTCAGTATGAAGCACAAGAGGATGCAAGCAAAGCCCTTGAAGCTACAAACATGAGTAAG TTGATGGACCGAGTCATTTCGGTTGAATATGCAGCTCGAGACGACGACGAGAGGAAAGACGCCGGCGGCGGTGGGGGGTATAGTCCAGACAGGACTCGCG ATCGATCCCCTAGGAAGCGGTCTGTGAGTCCCTATAGGAGAGTTAGGGGTAGCCCGGATTACGGCCGCGGCACTAGGGAGAGGGGTAGCCCCGGCTCTGG GCGGCGCGGCTGGCGCACGCGCCCTGACTATGGTCGTCGCGGTGGGCGCAGTCCGAGTCCATCCTACAAGAAGGAACGATCCAGCCCGATATATGCTGGT CGTCGCGGCGGCCGCAGCCCTAGCCCCAGCCCCTACAAGAAAGGAGGAAGATCCAGCCCTGACTGTGCTCGTGAATCGAGCCGGAGCCCTGCTTACAAGA GGGAGAGAGCTGGCAGCAGCCGGAGCCCCTACCGTAGGGAGAGGGGTGAAAATCCCGACAATGGCCAGGGACATGGACGTGGTGATGAACGGGATAGGGA AGAAGCTGAAATTGGTAACGGCATTGACCACTCTCCCGACGGGAGAGAGACCGGCGAGGTAAAGGATGACCGCCGTTCGTACGAGAGGGAGAGGGATGAT GGACGTAGCCCTAGTAACGGTCGCCCCGATTCGGTGCCGGAAGACGAGAGGGACAGCCCAAATAATGCTAGAGCTGAAGCTGATAGCCCCGTCCCGGACC GATACAGCAGTCCGGGTGCAGATGAATGA
AA sequence Show only first row Show all	>Lus10038883 pacid=23150569 polypeptide=Lus10038883 locus=Lus10038883.g ID=Lus10038883.BGIv1.0 annot-version=v1.0 MRPIFCGNFEYDARQSELERLFKRYGRVERIDMKSGFAFIYMEDERDAEDAIRGLDRTEFGRKGRRLRVEWTKQERGARGVQYEAQEDASKALEATNMSK LMDRVISVEYAARDDDERKDAGGGGGYSPDRTRDRSPRKRSVSPYRRVRGSPDYGRGTRERGSPGSGRRGWRTRPDYGRRGGRSPSPSYKKERSSPIYAG RRGGRSPSPSPYKKGGRSSPDCARESSRSPAYKRERAGSSRSPYRRERGENPDNGQGHGRGDERDREEAEIGNGIDHSPDGRETGEVKDDRRSYERERDD GRSPSNGRPDSVPEDERDSPNNARAEADSPVPDRYSSPGADE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G25500		ATRSP40, AT-SRP...	ARABIDOPSIS THALIANA ARGININE/...		Lus10038883 [exp]	0	1
AT2G33845			Nucleic acid-binding, OB-fold-...		Lus10015411 [exp]	6.8	0.7387
AT3G06610			DNA-binding enhancer protein-r...		Lus10016913 [exp]	8.9	0.7210
AT5G58240		FHIT	FRAGILE HISTIDINE TRIAD (.1.2)		Lus10034436 [exp]	13.4	0.7102
AT1G20510		OPCL1	OPC-8:0 CoA ligase1 (.1.2)		Lus10037934 [exp]	16.7	0.7373
AT1G47710			Serine protease inhibitor (SER...		Lus10034364 [exp]	23.7	0.7244
AT1G76730			NagB/RpiA/CoA transferase-like...		Lus10018870 [exp]	25.5	0.7365
AT1G79400		ATCHX2	cation/H+ exchanger 2, cation/...		Lus10026156 [exp]	27.1	0.7332
					Lus10014515 [exp]	28.6	0.7305
AT5G16990			Zinc-binding dehydrogenase fam...		Lus10030085 [exp]	28.7	0.7259
					Lus10013687 [exp]	31.5	0.6741

Compare expression of checked genes

Lus10038883 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.