Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52030 436 / 3e-152 TraB family protein (.1.2) AT1G05270 101 / 1e-23 TraB family protein (.1) AT2G32340 89 / 2e-19 TraB family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015005 [exp] 637 / 0 AT5G52030 461 / 5e-156 TraB family protein (.1.2) Lus10038420 [exp] 110 / 1e-26 AT1G05270 371 / 6e-127 TraB family protein (.1) Lus10015104 [exp] 102 / 3e-24 AT1G05270 447 / 4e-158 TraB family protein (.1) Lus10031571 [exp] 89 / 2e-19 AT1G05270 368 / 3e-127 TraB family protein (.1) Lus10023387 [exp] 81 / 3e-16 AT3G16780 343 / 1e-116 Ribosomal protein L19e family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G133900 [exp] 503 / 3e-179 AT5G52030 426 / 7e-149 TraB family protein (.1.2) Potri.007G121900 [exp] 96 / 1e-21 AT1G05270 404 / 7e-140 TraB family protein (.1) Potri.007G121800 [exp] 94 / 6e-21 AT1G05270 323 / 6e-109 TraB family protein (.1) Potri.017G038500 [exp] 86 / 1e-18 AT1G05270 417 / 1e-146 TraB family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0572 [flax] [poplar] TIKI PF01963 [flax] [poplar] TraB TraB family
Representative CDS sequence Show only first row Show all	>Lus10038884 pacid=23150549 polypeptide=Lus10038884 locus=Lus10038884.g ID=Lus10038884.BGIv1.0 annot-version=v1.0 ATGGAGACTCTTCTAAAATCCACGTTCCCAATCTCCTCCCGCCGCCGGATTCCCGCCAAACCAACCAGACCCGCCAAACCAACCAGACCCGCCAAACCCT TATCCGTCGCGATCAAGCCGCCGCCACCGGACTTCGACTTCCGGTCATCGGAGATATGTCAAGAATCTCGCGCCACAATCTCAACAATCCACCCGGAGCT AGCCGACTTGGCCAACGACGGCACATTAGTCCTCCTCCAGAAGAAACGCTACGGTCCGGTCCCTGCTTGGAGAACCGAGTTCAGCGAGCCGGAAGCGATA TGGGTGGTGGGCACCTCTCACATCTCCGACGAATCGGCGGCGGACGTTGAGCGTGTTGTTCGGGCTGTGAAGCCGGACAACGTCGTCGTCGAGCTCTGCC GAAGCAGAGCTGGCATCATGTACACTTCCAGCAATGAGGGATCAGAGCAAGATCAGATGAAATCGAGCGTGTTCTCACTGAGTGGGGATGGATTCTTCGG CGCCGTCAGTCGTAGCTTGAACTTAGGAGGCCAAACGGCTCTTGCTCTGCGGCTTCTCCTGGCGATGTTCTCTTCCAAGGTTTCCTCTGATGCCAACCGT CCCTTTGGGAATGAGTTTCGAGCTGCTCGAAAGGTGTCGGAGGAAGTTGGAGCTCAAGTAGTCCTAGGAGATCGTCCAATCGAAATCACGCTTGAAAGGG CTTGGAAGTCTCTTGAATGGAGTGAGAAGCTCAGCTTATTGACAGCAGTAGTTAAAGGGATCACATCATCATCAACTGTTCCCGCCACTTCCCAGGCAAC AACAATGGCAGACAAGGACGCAGATGCCTCGTTCCGCCTCTACGAACAGCTAAGCTTTTCGTATCCGTCGCTGCTCCACCCTCTGATCCACGAACGAGAC ACCTACTTGGCATGGTCTTTGAAACGGAGCAAAGCGGTGAACCATGGGAAGAACGTAGTGGGAGTGATAGGGAAAGGCCACATGAACGGCGTCCTATACG CGCTCGTCTCCGACTCTGGAGACCTCCGGTTCCGGGACCTCGTCGGGAACAGGGATGGTGGTGGGAAGCCGTTATCGTTTGTTAACGGTGCGGTGGTTGA TGTCCTCAAGGGGCTTGTTAGGGACACGGTGATCGGCGTCCTGGTTTGGCAGGTTTACGAGTTGGTGACCAAATAG
AA sequence Show only first row Show all	>Lus10038884 pacid=23150549 polypeptide=Lus10038884 locus=Lus10038884.g ID=Lus10038884.BGIv1.0 annot-version=v1.0 METLLKSTFPISSRRRIPAKPTRPAKPTRPAKPLSVAIKPPPPDFDFRSSEICQESRATISTIHPELADLANDGTLVLLQKKRYGPVPAWRTEFSEPEAI WVVGTSHISDESAADVERVVRAVKPDNVVVELCRSRAGIMYTSSNEGSEQDQMKSSVFSLSGDGFFGAVSRSLNLGGQTALALRLLLAMFSSKVSSDANR PFGNEFRAARKVSEEVGAQVVLGDRPIEITLERAWKSLEWSEKLSLLTAVVKGITSSSTVPATSQATTMADKDADASFRLYEQLSFSYPSLLHPLIHERD TYLAWSLKRSKAVNHGKNVVGVIGKGHMNGVLYALVSDSGDLRFRDLVGNRDGGGKPLSFVNGAVVDVLKGLVRDTVIGVLVWQVYELVTK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G52030			TraB family protein (.1.2)		Lus10038884 [exp]	0	1
AT3G05625			Tetratricopeptide repeat (TPR)...		Lus10031474 [exp]	1.7	0.9362
AT3G02690			nodulin MtN21 /EamA-like trans...		Lus10010953 [exp]	2.8	0.9065
AT3G02690			nodulin MtN21 /EamA-like trans...		Lus10031371 [exp]	3.5	0.9202
AT1G73110			P-loop containing nucleoside t...		Lus10041627 [exp]	5.8	0.9354
AT5G20140			SOUL heme-binding family prote...		Lus10013345 [exp]	6.7	0.9231
AT2G24060			Translation initiation factor ...		Lus10035814 [exp]	7.3	0.9059
AT1G54350		ABCD2	ATP-binding cassette D2, ABC t...		Lus10001758 [exp]	12.0	0.8994
AT3G05410			Photosystem II reaction center...		Lus10004498 [exp]	13.6	0.9185
AT3G17670			tetratricopeptide repeat (TPR)...		Lus10007446 [exp]	14.4	0.8521
AT3G24430		HCF101	HIGH-CHLOROPHYLL-FLUORESCENCE ...		Lus10043252 [exp]	15.9	0.9066

Compare expression of checked genes

Lus10038884 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.