Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G16560 409 / 1e-143 Per1-like family protein (.1.2.3.4) AT5G62130 404 / 2e-141 Per1-like family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015006 [exp] 652 / 0 AT1G16560 419 / 2e-147 Per1-like family protein (.1.2.3.4) Lus10027411 [exp] 509 / 0 AT1G16560 393 / 5e-137 Per1-like family protein (.1.2.3.4) Lus10031658 [exp] 419 / 1e-146 AT5G62130 328 / 3e-111 Per1-like family protein (.1.2) Lus10031187 [exp] 417 / 1e-146 AT1G16560 495 / 2e-177 Per1-like family protein (.1.2.3.4) Lus10031765 [exp] 421 / 5e-142 AT1G16560 496 / 2e-171 Per1-like family protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G134300 [exp] 496 / 1e-177 AT1G16560 466 / 8e-166 Per1-like family protein (.1.2.3.4) Potri.015G136600 [exp] 468 / 9e-167 AT1G16560 477 / 2e-170 Per1-like family protein (.1.2.3.4) Potri.007G065800 [exp] 454 / 3e-161 AT1G16560 538 / 0.0 Per1-like family protein (.1.2.3.4) Potri.002G177300 [exp] 54 / 3e-09 AT1G16560 0 / 1 Per1-like family protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0192 [flax] [poplar] GPCR_A PF04080 [flax] [poplar] Per1 Per1-like family
Representative CDS sequence Show only first row Show all	>Lus10038885 pacid=23150639 polypeptide=Lus10038885 locus=Lus10038885.g ID=Lus10038885.BGIv1.0 annot-version=v1.0 ATGGATTGGCGCCGGAGCCGATTTGTGTTCTTCGTTGCGTTCGTCTGCTTGCTCCGTCCACTTCGCGCCAGCGAAGGCGACGCCGATCCGGTTTACAAGG GCTGTGTGGAGGAGTGCCAGACGACTGGATGCGTGGGGAAGAACTGCTTCCAGCACTGCAAATTCTCGTCGGATGGGAAGCCGATTGACGGTCCTTGGTA TCTTCAGGAGCCGCTTTATCAGAGGTGGAAGCAATGGGACTGTAGGAGTGACTGTCAGTACAACTGTATGATTGTTAGGGAGGATGAGAAGTTGGAGCTT GGTCTTAGTCCTGTCAAGTACCATGGGAGGTGGCCGTTTCATCGTGTTTATGGTATCCAGGAACCGCTTGCTGTTGGTTTAGCTGCAGTCATTCTTGCGA TTCAATTTCATGGCTGGATATCATTCTTCATCCTTGTGAACTACAAGCTGCCTTTGAGGCCAGATAAGAAGACTTACTATGAATGCACTGGTCTGTGGCA CCTCTACGCGATGCTGTCGATGAATGCCTGGCTCTGGTGTGCTGTTTTCCATACTCGGGATGTCGAGTTAACAGAGAAACTATACTGTTCATCCACAGTA GCATGGCTAGGCTTCACCCTTATCTTAGCAACACTTCGAGCTTTCAACATAAGAGACGAAGCCGCAAGAGTCATGGTAGCTGCCCCAGTGATTGCTTTCA TCACCACACACATCTTATACTTGAACTTCTACAACTTCGACAAAGGTCTCAACTCCAAAGTGAGTGCAGCAATAACAGTCGTCCAGGTCCTGATATGGGC AGTCTGGGCTACTGCCACTCGCCACCCATCCCGATGGAAAGTGTGGGTCACCGTCTTTGTAGGAGGAACTCTCTCCTTGATCCTGGAAGCCTACGACTTC CCTCCATTCCAGAGATTCGTCGATTCTCGAGCCATCTGGCACGCTCTAGCCGTCCCCTTCGGTTACATCTGGTGGAGCTTTGTTAGAGACGACGCCGAGT TCAGTACATCAAGCCTCCTCAAGAAAACCAAGTAA
AA sequence Show only first row Show all	>Lus10038885 pacid=23150639 polypeptide=Lus10038885 locus=Lus10038885.g ID=Lus10038885.BGIv1.0 annot-version=v1.0 MDWRRSRFVFFVAFVCLLRPLRASEGDADPVYKGCVEECQTTGCVGKNCFQHCKFSSDGKPIDGPWYLQEPLYQRWKQWDCRSDCQYNCMIVREDEKLEL GLSPVKYHGRWPFHRVYGIQEPLAVGLAAVILAIQFHGWISFFILVNYKLPLRPDKKTYYECTGLWHLYAMLSMNAWLWCAVFHTRDVELTEKLYCSSTV AWLGFTLILATLRAFNIRDEAARVMVAAPVIAFITTHILYLNFYNFDKGLNSKVSAAITVVQVLIWAVWATATRHPSRWKVWVTVFVGGTLSLILEAYDF PPFQRFVDSRAIWHALAVPFGYIWWSFVRDDAEFSTSSLLKKTK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G16560			Per1-like family protein (.1.2...		Lus10038885 [exp]	0	1
AT1G16560			Per1-like family protein (.1.2...		Lus10015006 [exp]	1.4	0.9111
AT5G05090	GARP		Homeodomain-like superfamily p...		Lus10027291 [exp]	2.2	0.8679
AT3G42860			zinc knuckle (CCHC-type) famil...		Lus10012985 [exp]	2.2	0.9118
AT5G61960		AML1	MEI2-like protein 1 (.1.2)		Lus10032537 [exp]	6.2	0.8933
AT3G22430			unknown protein		Lus10041205 [exp]	9.5	0.8583
AT3G22960		PKP-ALPHA, PKP1	PLASTIDIAL PYRUVATE KINASE 1, ...		Lus10012446 [exp]	9.6	0.8328
AT1G27320		AHK3	histidine kinase 3 (.1)		Lus10037032 [exp]	10.8	0.8302
AT3G20475		ATMSH5	MUTS-homologue 5 (.1)		Lus10021545 [exp]	12.0	0.8592
AT1G74160			unknown protein		Lus10017857 [exp]	12.0	0.8509
AT5G28770	bZIP	BZO2H3, ATBZIP6...	Arabidopsis thaliana basic leu...		Lus10006590 [exp]	12.2	0.8407

Compare expression of checked genes

Lus10038885 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.