Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25450 825 / 0 ABCB28, ATNAP8 ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 8, ATP-binding cassette B28, non-intrinsic ABC protein 8 (.1.2.3) AT5G39040 228 / 7e-65 AtALS1, ABCB27, ALS1, ATTAP2 ARABIDOPSIS THALIANA TRANSPORTER ASSOCIATED WITH ANTIGEN PROCESSING PROTEIN 2, ALUMINUM SENSITIVE 1, ATP-binding cassette B27, transporter associated with antigen processing protein 2 (.1) AT3G28345 232 / 4e-64 MDR13, ABCB15 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) AT4G01830 229 / 4e-63 ABCB5, PGP5 ATP-binding cassette B5, P-glycoprotein 5 (.1) AT1G02520 225 / 9e-62 MDR8, ABCB11, PGP11 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1) AT2G36910 223 / 4e-61 ATMDR1, ATPGP1, PGP1, ABCB1 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) AT3G28390 222 / 1e-60 ABCB18, PGP18 ATP-binding cassette B18, P-glycoprotein 18 (.1) AT1G10680 222 / 1e-60 ABCB10, PGP10 ATP-binding cassette B10, P-glycoprotein 10 (.1) AT3G28415 221 / 2e-60 ABCB22 ATP-binding cassette B22, ABC transporter family protein (.1) AT1G02530 221 / 2e-60 ABCB12, PGP12 ATP-binding cassette B12, P-glycoprotein 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015007 [exp] 1154 / 0 AT4G25450 858 / 0.0 ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 8, ATP-binding cassette B28, non-intrinsic ABC protein 8 (.1.2.3) Lus10036616 [exp] 230 / 4e-68 AT3G28345 479 / 6e-159 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10004519 [exp] 224 / 3e-65 AT1G02520 636 / 0.0 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1) Lus10021145 [exp] 228 / 5e-65 AT5G39040 868 / 0.0 ARABIDOPSIS THALIANA TRANSPORTER ASSOCIATED WITH ANTIGEN PROCESSING PROTEIN 2, ALUMINUM SENSITIVE 1, ATP-binding cassette B27, transporter associated with antigen processing protein 2 (.1) Lus10007987 [exp] 226 / 3e-64 AT5G39040 875 / 0.0 ARABIDOPSIS THALIANA TRANSPORTER ASSOCIATED WITH ANTIGEN PROCESSING PROTEIN 2, ALUMINUM SENSITIVE 1, ATP-binding cassette B27, transporter associated with antigen processing protein 2 (.1) Lus10035834 [exp] 230 / 3e-63 AT3G28345 1271 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10010068 [exp] 226 / 6e-62 AT3G62150 1820 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Lus10023929 [exp] 223 / 9e-61 AT2G36910 2300 / 0.0 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) Lus10004583 [exp] 222 / 1e-60 AT4G18050 1660 / 0.0 ATP-binding cassette B9, P-glycoprotein 9 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G136700 [exp] 883 / 0 AT4G25450 953 / 0.0 ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 8, ATP-binding cassette B28, non-intrinsic ABC protein 8 (.1.2.3) Potri.015G059700 [exp] 253 / 3e-74 AT5G39040 874 / 0.0 ARABIDOPSIS THALIANA TRANSPORTER ASSOCIATED WITH ANTIGEN PROCESSING PROTEIN 2, ALUMINUM SENSITIVE 1, ATP-binding cassette B27, transporter associated with antigen processing protein 2 (.1) Potri.015G059800 [exp] 253 / 4e-74 AT5G39040 887 / 0.0 ARABIDOPSIS THALIANA TRANSPORTER ASSOCIATED WITH ANTIGEN PROCESSING PROTEIN 2, ALUMINUM SENSITIVE 1, ATP-binding cassette B27, transporter associated with antigen processing protein 2 (.1) Potri.015G059600 [exp] 251 / 1e-73 AT5G39040 874 / 0.0 ARABIDOPSIS THALIANA TRANSPORTER ASSOCIATED WITH ANTIGEN PROCESSING PROTEIN 2, ALUMINUM SENSITIVE 1, ATP-binding cassette B27, transporter associated with antigen processing protein 2 (.1) Potri.014G113000 [exp] 237 / 2e-65 AT3G62150 1767 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Potri.016G093600 [exp] 231 / 2e-63 AT2G36910 2120 / 0.0 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) Potri.006G123900 [exp] 230 / 3e-63 AT2G36910 2138 / 0.0 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) Potri.017G085000 [exp] 228 / 1e-62 AT3G28345 1774 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.017G097200 [exp] 221 / 2e-62 AT5G39040 892 / 0.0 ARABIDOPSIS THALIANA TRANSPORTER ASSOCIATED WITH ANTIGEN PROCESSING PROTEIN 2, ALUMINUM SENSITIVE 1, ATP-binding cassette B27, transporter associated with antigen processing protein 2 (.1) Potri.002G187400 [exp] 227 / 3e-62 AT3G62150 1702 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0241 [flax] [poplar] ABC_membrane PF00664 [flax] [poplar] ABC_membrane ABC transporter transmembrane region CL0023 [flax] [poplar] P-loop_NTPase PF00005 [flax] [poplar] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Lus10038886 pacid=23150616 polypeptide=Lus10038886 locus=Lus10038886.g ID=Lus10038886.BGIv1.0 annot-version=v1.0 ATGGCGTCTTCTCCGGCCACCACCATCACCACCACCACACTCCTCAACTCCAACCCCACGCGCTTCCGTCTCCCGTTGACCCCCTACGCGCGTAACCTCA GCCTCAACCTCTCCCGCAATCGTCGTCCTCTTCAATTCCGTCACTCCTCTCTACAACATTTCCCGCCAATTCAACAGTATCCTCGGCGGACGGCGGCCAC TCCGTTCGCCTACGTCACCGGCCCGGCCTCTGACCCGAACACGACCGATCCTAACCCAAAATCCTCCTCAAATGGCAACGAGAATGCCGACGACGACAAC GGCGAAGAGGACACGTCATCGTCGAAGAAGCTGATAACGTGGAGGCTCCTGTCGAGCTTGTTGTTTCAGCATAAGCTGAGGATTGGAATTTCTGTGCTGG CGCTTGTTGGATGCACCACTTGTACACTCTCCATGCCGATCTTTTCAGGGAGATTCTTTGAGGTGCTGGTTGGTGTAAGGCAGGAGCCGCTGTGGAAGCT GCTTTGCAAAGTCGGACTAGCGTACGCCATGGAACCGATTCTTACTGTGATGTATGTTGTGAACATGAATGTTGTTTGGGAGAGTGTGATGTCCACGCTT AGAGCTCAGTTGTTCAGAAGAGTTCTGATTCAAAAGGTGGAGTTTTTCGATCGGTATAAGGTATGGTTTCGACGAACTGTTAATTCGATGAGAGGGGTTC ATCTTCTGGTTCTTGATTACAGTTGTGTGGCTATGTTCTTCGTTTTAGGTTGTGCTTGGCTCGGAACCCCTGCTAATAGTTCATTTATGTGCATTTGCTA TCTCCAGATCCTTGGGGTGGTATCCATCCTGTTCACTTTAGCTCCTCAGCTGGCTCCAGTTTTGGGAATCTTGATATTTTCGATTTCTTTTTTAGCTGCT GTATACAAGCGATCAACTCTTCCCGTTTTCAGAAGTCATGGAGCGACTCAAGCATCCATGTCGGACTGTGTAACAGAGACTCTCTCGGCTATTCGCACTG TAAGATCATTTAGTGGCGAACACCGTCAAATGTTGATGTTTGGTGCCCAGGTTCTTGCATATCGGCGTAGTGGCATTAGGCTTGGGATGTTCAAGTCTCT AAATGAATCTGTGACAAGAGCAGCTGTATACATCTCTCTAATTGCTCTGTATTGTCTCGGAGGAAACAAAGTGAAGGCTGGTGAAATCTCTGTTGGAACT TTCGCTTCTTTTATCGGATATACTTTCACGTTGACATTTGCTGTTCAAGGCCTGGTCAATACATCCGGGGATCTTCGTGCAACTCTTGCTGCTGTTGAAA GGATTAATTCTATCTTGACTGGTGTAGAAGTTGACAAAACCCTTGCCTATGGTTTAGAGAAGGAGATCCAGCAGAAGGAACACAAAAATGAGGCTCTTAA ACTGTTTGCTGACAATGGCCATACCAGGAAGAGCTCTCGAAACTTGCATTACATGTCGGCCTTGAAATCGGCCAATGACCTATATAACAGTGCCTGGTCT GCCGACATTTGTCTCGAAGACGTGCATTTCTCTTATCCCTTGAGACCTGACGTGGATATACTAAGCGGTCTTAACTTGACTCTGAAGCGTGGAACCATCA CTGCTCTAGTTGGCCCAAGTGGTGCAGGCAAAAGCACCATAGTGCAGCTGTTAGCACGATTCTACGAGCCAACCAAAGGTCGAATAACCATTTCGGGGGA AGATATCAGGACTTTCGAAAAAACGGAATGGGCTCGTGTTGTCTCGATCGTAAACCAAGAACCAGTTCTTTTCTCGGTGTCAGTGGGAGAGAACATCGCG TACGGGCTTCCTGATGAAAATGTGTCCAAAGATGACATTATCAAGGCTGCCAAAGCTGCAAATGCACATGAGTTCATAGTTTCACTTCCACAGGGCTACG ACACTCTAGTTGGTGAGCGCGGAGGCTTGCTGAGTGGAGGCCAGAGACAGAGGATCGCCATCGCGAGAGCTCTACTCAAGAACGCCCCGATCCTCATCCT GGACGAGGCCACAAGTGCACTAGATGCGGTCAGCGAACGCCTAGTACAGCAAGCGCTCAACCACCTAATGAAAGGCAGGACGACTCTGGTGATTGCGCAC AGACTAAGCACGGTCCAGAACGCTCACCAGATTGCAGTCTGTTCCGATGGCAGAGTCGCCGAACTAGGTAACCATTCCCAGCTGCTTGCTAGCAAAGGTA AGTACGCTACCTTAGTCGACACTCAAAGACTCGCTTTCGAATGA
AA sequence Show only first row Show all	>Lus10038886 pacid=23150616 polypeptide=Lus10038886 locus=Lus10038886.g ID=Lus10038886.BGIv1.0 annot-version=v1.0 MASSPATTITTTTLLNSNPTRFRLPLTPYARNLSLNLSRNRRPLQFRHSSLQHFPPIQQYPRRTAATPFAYVTGPASDPNTTDPNPKSSSNGNENADDDN GEEDTSSSKKLITWRLLSSLLFQHKLRIGISVLALVGCTTCTLSMPIFSGRFFEVLVGVRQEPLWKLLCKVGLAYAMEPILTVMYVVNMNVVWESVMSTL RAQLFRRVLIQKVEFFDRYKVWFRRTVNSMRGVHLLVLDYSCVAMFFVLGCAWLGTPANSSFMCICYLQILGVVSILFTLAPQLAPVLGILIFSISFLAA VYKRSTLPVFRSHGATQASMSDCVTETLSAIRTVRSFSGEHRQMLMFGAQVLAYRRSGIRLGMFKSLNESVTRAAVYISLIALYCLGGNKVKAGEISVGT FASFIGYTFTLTFAVQGLVNTSGDLRATLAAVERINSILTGVEVDKTLAYGLEKEIQQKEHKNEALKLFADNGHTRKSSRNLHYMSALKSANDLYNSAWS ADICLEDVHFSYPLRPDVDILSGLNLTLKRGTITALVGPSGAGKSTIVQLLARFYEPTKGRITISGEDIRTFEKTEWARVVSIVNQEPVLFSVSVGENIA YGLPDENVSKDDIIKAAKAANAHEFIVSLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNAPILILDEATSALDAVSERLVQQALNHLMKGRTTLVIAH RLSTVQNAHQIAVCSDGRVAELGNHSQLLASKGKYATLVDTQRLAFE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G25450		ABCB28, ATNAP8	ARABIDOPSIS THALIANA NON-INTRI...		Lus10038886 [exp]	0	1
AT1G09010			glycoside hydrolase family 2 p...		Lus10029917 [exp]	3.2	0.8230
AT3G21100			RNA-binding (RRM/RBD/RNP motif...		Lus10027351 [exp]	3.5	0.7845
AT3G32940			RNA-binding KH domain-containi...		Lus10039188 [exp]	8.0	0.7710
AT1G16570			UDP-Glycosyltransferase superf...		Lus10026065 [exp]	9.7	0.7845
AT2G41020			WW domain-containing protein (...		Lus10027285 [exp]	12.6	0.7478
AT2G28130			unknown protein		Lus10021421 [exp]	13.4	0.7805
AT5G45140		NRPC2	nuclear RNA polymerase C2 (.1)		Lus10028778 [exp]	13.6	0.8006
AT3G12280		RB1, RBL1, RBR1...	RETINOBLASTOMA 1, RETINOBLASTO...		Lus10008667 [exp]	13.9	0.8051
AT3G05250			RING/U-box superfamily protein...		Lus10004467 [exp]	14.3	0.7233
AT3G55460		SCL30, At-SCL30	SC35-like splicing factor 30 (...		Lus10002699 [exp]	19.7	0.7695

Compare expression of checked genes

Lus10038886 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.