Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62140 54 / 7e-09 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015008 [exp] 0 / 1 AT5G62140 241 / 2e-80 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G134500 [exp] 0 / 1 AT5G62140 196 / 1e-62 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10038887 pacid=23150407 polypeptide=Lus10038887 locus=Lus10038887.g ID=Lus10038887.BGIv1.0 annot-version=v1.0 ATGCTAATTATGATGTCATGCTGTTGCAACACCCACGTCACGTTGCCGGAGACAAAATATGCTAATTATGATGACAGGAACCGGTACCGCCATCGCCACA AAATCGAACGAAAACAACATTACAGTGGACTTCGACCTGGAAACACTCTACATCCCACCGGTAACAAGCGAGACGACCCGGTTCCTAGGCCTCCCATTGC CACCGGGCTTAAAGATAGACATAGTCCCTGTATCATTCAACGGCAGGATTGCTCGGGATTTGGGGAATGTGGAGTTCGAATTCGTTGCGAACTTCTGCTT CATGGTTGCGGGAGGGAGCCTGTACAGAGCTCCACCGCTGCTTGTGAAGACCGTCTTGACGACCGAAGAGTCGAAAGGGACGATCCGGAGCGGGAAGGGG GAGAGGCTGATGAAGAAGGGAAATGCAGGTTGACTGGGGTGGCTGCCGTCGATCGGATCGACGACTGGTTTATGAACACATTTCTCAGTCTGCCCGCTGA GTGTCTGGCAGTTCTATACGCTGTCGTTTCGGTTTCGTGA
AA sequence Show only first row Show all	>Lus10038887 pacid=23150407 polypeptide=Lus10038887 locus=Lus10038887.g ID=Lus10038887.BGIv1.0 annot-version=v1.0 MLIMMSCCCNTHVTLPETKYANYDDRNRYRHRHKIERKQHYSGLRPGNTLHPTGNKRDDPVPRPPIATGLKDRHSPCIIQRQDCSGFGECGVRIRCELLL HGCGREPVQSSTAACEDRLDDRRVERDDPEREGGEADEEGKCRLTGVAAVDRIDDWFMNTFLSLPAECLAVLYAVVSVS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G62140			unknown protein		Lus10038887 [exp]	0	1
AT4G27570			UDP-Glycosyltransferase superf...		Lus10001858 [exp]	2.4	0.8718
AT1G66930			Protein kinase superfamily pro...		Lus10022367 [exp]	3.5	0.8739
AT2G37640		ATHEXPALPHA1.9,...	ARABIDOPSIS THALIANA EXPANSIN ...		Lus10002638 [exp]	4.8	0.8911
AT3G19000			2-oxoglutarate (2OG) and Fe(II...		Lus10023850 [exp]	8.6	0.8863
AT2G34930			disease resistance family prot...		Lus10001035 [exp]	9.3	0.8754
AT1G20510		OPCL1	OPC-8:0 CoA ligase1 (.1.2)		Lus10037934 [exp]	10.2	0.8647
AT5G52390			PAR1 protein (.1)		Lus10040702 [exp]	10.2	0.7742
AT1G02520		MDR8, ABCB11, P...	multi-drug resistance 8, ATP-b...		Lus10011976 [exp]	10.8	0.8009
AT1G25570			Di-glucose binding protein wit...		Lus10041488 [exp]	10.8	0.8179
AT3G23325			Splicing factor 3B subunit 5/R...		Lus10011813 [exp]	11.2	0.8368

Compare expression of checked genes

Lus10038887 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.