Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G43050 196 / 5e-65 NPQ6 NONPHOTOCHEMICAL QUENCHING 6, Protein of unknown function (DUF565) (.1) AT1G65420 47 / 8e-07 NPQ7 NONPHOTOCHEMICAL QUENCHING 7, Protein of unknown function (DUF565) (.1) AT3G56830 42 / 4e-05 Protein of unknown function (DUF565) (.1), Protein of unknown function (DUF565) (.2), Protein of unknown function (DUF565) (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039937 [exp] 41 / 9e-05 AT1G65420 200 / 3e-66 NONPHOTOCHEMICAL QUENCHING 7, Protein of unknown function (DUF565) (.1) Lus10027674 [exp] 40 / 0.0003 AT1G65420 195 / 2e-63 NONPHOTOCHEMICAL QUENCHING 7, Protein of unknown function (DUF565) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G134700 [exp] 209 / 2e-70 AT5G43050 212 / 1e-71 NONPHOTOCHEMICAL QUENCHING 6, Protein of unknown function (DUF565) (.1) Potri.008G076900 [exp] 52 / 3e-08 AT1G65420 229 / 2e-76 NONPHOTOCHEMICAL QUENCHING 7, Protein of unknown function (DUF565) (.1) Potri.002G146000 [exp] 42 / 7e-05 AT3G56830 171 / 3e-53 Protein of unknown function (DUF565) (.1), Protein of unknown function (DUF565) (.2), Protein of unknown function (DUF565) (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04483 [flax] [poplar] DUF565 Protein of unknown function (DUF565)
Representative CDS sequence Show only first row Show all	>Lus10038888 pacid=23150254 polypeptide=Lus10038888 locus=Lus10038888.g ID=Lus10038888.BGIv1.0 annot-version=v1.0 ATGGCGACCCATCGAGCAATCACATCCCTAATCTCTCCAATCCCCTTCCGATCCACACTCCACCCCACCAAATCCCACATCTCCTCCCTCTCCAGATTCC CACCCCTCCGCATCCGAGCCGCTCAAGACTCCGCCGGCATCGGCGGAGGCGGAGGGGAAAATTCTCCTCGGCGGCTGATCGACATAATCAGGCTGGTCCC GGACCTGACGAGGACGTACTTCCGTAAACCGTCGAGGCGAGCTCTGTTCGGGGGGATCTCGCTGCTGGGAGGGTTCTACGTGGCGCAGACGATCTCGCTG TCGTTCGGAGCTCTGGGGGTGAACGACGTGATAGCGGCGGTGGTGTGCGTCCTGCTGACGGAGTACGTGACGAGATTCTACTACAGCCGGCCCAAGGTGA CTTTCCCACTGGCGCTGCTTAACAATTTCAAGATGGGTTTCACTTACGGCCTCTTCATCGACGCCTTCAAGCTCGCCAGCTGA
AA sequence Show only first row Show all	>Lus10038888 pacid=23150254 polypeptide=Lus10038888 locus=Lus10038888.g ID=Lus10038888.BGIv1.0 annot-version=v1.0 MATHRAITSLISPIPFRSTLHPTKSHISSLSRFPPLRIRAAQDSAGIGGGGGENSPRRLIDIIRLVPDLTRTYFRKPSRRALFGGISLLGGFYVAQTISL SFGALGVNDVIAAVVCVLLTEYVTRFYYSRPKVTFPLALLNNFKMGFTYGLFIDAFKLAS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G43050		NPQ6	NONPHOTOCHEMICAL QUENCHING 6, ...		Lus10038888 [exp]	0	1
AT3G22530			unknown protein		Lus10004901 [exp]	1.0	0.9164
AT4G22250			RING/U-box superfamily protein...		Lus10035335 [exp]	4.0	0.8585
AT1G53280		AtDJ1B	DJ-1 homolog B, Class I glutam...		Lus10009525 [exp]	4.6	0.8615
AT5G57360		LKP1, FKL2, ADO...	ZEITLUPE, LOV KELCH PROTEIN 1,...		Lus10006959 [exp]	4.7	0.8660
AT1G01840			unknown protein		Lus10041376 [exp]	5.9	0.8546
AT2G45590			Protein kinase superfamily pro...		Lus10041395 [exp]	6.3	0.8550
AT4G05460			RNI-like superfamily protein (...		Lus10023277 [exp]	7.5	0.8494
AT5G55670			RNA-binding (RRM/RBD/RNP motif...		Lus10038758 [exp]	7.6	0.7875
AT3G55370	DOF	OBP3, AtDof3. 6	OBF-binding protein 3 (.1.2.3)		Lus10038310 [exp]	9.5	0.7975
AT4G03965			RING/U-box superfamily protein...		Lus10029993 [exp]	10.5	0.8413

Compare expression of checked genes

Lus10038888 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.