Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12580 539 / 0 PEPKR1 phosphoenolpyruvate carboxylase-related kinase 1 (.1) AT2G35890 301 / 3e-96 CPK25 calcium-dependent protein kinase 25 (.1) AT5G12180 298 / 7e-95 CPK17 calcium-dependent protein kinase 17 (.1) AT5G19360 296 / 2e-94 CPK34 calcium-dependent protein kinase 34 (.1) AT2G41860 293 / 7e-93 CPK14 calcium-dependent protein kinase 14 (.1.2) AT1G61950 293 / 1e-92 CPK19 calcium-dependent protein kinase 19 (.1) AT1G76040 289 / 5e-91 CPK29 calcium-dependent protein kinase 29 (.1.2) AT5G04870 289 / 1e-90 AK1, ATCPK1, CPK1 calcium dependent protein kinase 1 (.1) AT5G12480 287 / 1e-90 CPK7 calmodulin-domain protein kinase 7 (.1.2) AT3G10660 286 / 5e-89 ATCPK2, CPK2 calmodulin-domain protein kinase cdpk isoform 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015009 [exp] 959 / 0 AT1G12580 549 / 0.0 phosphoenolpyruvate carboxylase-related kinase 1 (.1) Lus10008958 [exp] 298 / 4e-95 AT5G04870 877 / 0.0 calcium dependent protein kinase 1 (.1) Lus10028862 [exp] 298 / 2e-94 AT5G04870 940 / 0.0 calcium dependent protein kinase 1 (.1) Lus10021531 [exp] 295 / 2e-93 AT3G20410 831 / 0.0 calmodulin-domain protein kinase 9 (.1) Lus10040071 [exp] 293 / 8e-93 AT3G20410 825 / 0.0 calmodulin-domain protein kinase 9 (.1) Lus10021248 [exp] 295 / 2e-92 AT3G10660 809 / 0.0 calmodulin-domain protein kinase cdpk isoform 2 (.1) Lus10013603 [exp] 294 / 4e-92 AT3G10660 803 / 0.0 calmodulin-domain protein kinase cdpk isoform 2 (.1) Lus10036050 [exp] 291 / 4e-92 AT5G19360 908 / 0.0 calcium-dependent protein kinase 34 (.1) Lus10023346 [exp] 289 / 4e-92 AT5G12180 780 / 0.0 calcium-dependent protein kinase 17 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G136900 [exp] 682 / 0 AT1G12580 587 / 0.0 phosphoenolpyruvate carboxylase-related kinase 1 (.1) Potri.012G134600 [exp] 661 / 0 AT1G12580 569 / 0.0 phosphoenolpyruvate carboxylase-related kinase 1 (.1) Potri.003G120800 [exp] 542 / 0 AT1G12580 605 / 0.0 phosphoenolpyruvate carboxylase-related kinase 1 (.1) Potri.008G014700 [exp] 301 / 1e-95 AT5G04870 922 / 0.0 calcium dependent protein kinase 1 (.1) Potri.016G066700 [exp] 300 / 1e-94 AT3G10660 834 / 0.0 calmodulin-domain protein kinase cdpk isoform 2 (.1) Potri.010G244800 [exp] 295 / 3e-93 AT5G04870 899 / 0.0 calcium dependent protein kinase 1 (.1) Potri.004G015500 [exp] 290 / 6e-92 AT4G04720 797 / 0.0 calcium-dependent protein kinase 21 (.1) Potri.009G069200 [exp] 289 / 2e-91 AT5G12180 914 / 0.0 calcium-dependent protein kinase 17 (.1) Potri.011G003400 [exp] 289 / 2e-91 AT4G04720 815 / 0.0 calcium-dependent protein kinase 21 (.1) Potri.006G200600 [exp] 291 / 3e-91 AT5G04870 842 / 0.0 calcium dependent protein kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10038889 pacid=23150728 polypeptide=Lus10038889 locus=Lus10038889.g ID=Lus10038889.BGIv1.0 annot-version=v1.0 ATGGCTGTTGCTGATAATGGCAGCAACAGTTGTAAGGATTCATCGTCGAAGAAGCAGCCGTGTAGCTGTTACACTGTCTCGAGCTTGGTCGAACCGATTT TGGAGACGAGCTTGGTGTCGAACTTGAAAGAGAAATATGTTCTTGGGGAGCAGTTAGGTTGGGGACAGTTTGGTGTGATTAGGGTCTGCACTGAGAAGTC CACCGGGGAGCTTTTAGCGTGCAAGTCAATTGCCAAGGATAGGTTGGTGACGTCGGATGATATAAGGAGTGTCAAGCTCGAGATCGAGATCATGACCAAG CTGTCTGGCCACCCGAATGTGGTGGATCTCAAGGCGGTTTACGAGGACGAGGATAATGTCCACTTGGTGATGGAGCTTTGTGCAGGTGGGGAGCTGTTTC ATCAGTTGGAGAAGCATGGTCGGTTCTGCGAAGTCGAAGCCAAAGTTCTGTTTAAAGATCTGATGCAAGTGGTGTTGCATTGCCATGAGATTGGAGTTGT TCACCGGGATTTGAAGCCCGAGAACATCCTCTTGGCGACAAATTCGTCGTCTTTGCAGCAGATCAAGCTGGCTGATTTTGGCCTTGCAACTTATGTCAAA CCCGGTCAGAGTTTGCATGGAACCGTTGGAAGCCCGTTTTATATCGCACCCGAAGTGCTCTCCGGAGGGTATAATCAAACTGCTGATGTCTGGAGTGCAG GGGTTATCCTCTACATTCTTCTCAGTGGGATGCCACCTTTCTGGGGGAAGACTAAGTCGCAGATATTCAATGCTGTCAGGGCAGCTGATCTTCGATTCCC ATCAAATCTCTGGGATCGTGTCACAAACTCCGCGAAAGAGTTGGTTCGAGGAATGCTACGTGTCGATCCCTTGCAGAGGCTCACTGCTCAGCAAGTGCTA GAGCATAGCTGGATGAAAGATGAAAGCCCCTGTCTTGAGGAAACCTGTCCCCATACGAGGGAGAGTTGTCGAGATTGGGACAACTTAGGTTCAAGTTCAT TCTCGACATTGATGACCAGGAATCAAGACATCAGCTTCGGCGCTAATATTATGTGTGAGGAGGCTACTTCAACGAGTAGATCGCCGTTCTCTTCTTTCTT AGCACAGCCAGCTGTTGTATCCGGTGGATTCTCATTTCGTAGCAATGATGACACAGAGGAGTCCTCCACTTCGCCTTTGGAATTCGCCTCCTCCTCTCCT ATGTCCTCAATGCTGAGCTTTGCCTTCTTCGATCCAAATCCCGCTCTGGATGTCACAGCCAACACTTGCAGAGTAGATGCAGTTCTTGGAGAGGCCAACT TGTCTCTATGCTGTGGAGGAGAAGTAGTGGTAGAACAGCAACACAAGACATCCGAGTTTAAGCGAGCAGGAGGAACGATCGGTACCAGGATCCTCGGAAT GCACAGCAAGAGGAACCGAACGATCGGTCTTGGTGAGCGAGAGCAGCTTGACCTAATGGTGACAGAATCAGTGATCCGGTGGGCGTCCTGCACGAATCTC CCCACTGCTTCATCTCTCAGGTCCTCCCTCGTCTGCTGA
AA sequence Show only first row Show all	>Lus10038889 pacid=23150728 polypeptide=Lus10038889 locus=Lus10038889.g ID=Lus10038889.BGIv1.0 annot-version=v1.0 MAVADNGSNSCKDSSSKKQPCSCYTVSSLVEPILETSLVSNLKEKYVLGEQLGWGQFGVIRVCTEKSTGELLACKSIAKDRLVTSDDIRSVKLEIEIMTK LSGHPNVVDLKAVYEDEDNVHLVMELCAGGELFHQLEKHGRFCEVEAKVLFKDLMQVVLHCHEIGVVHRDLKPENILLATNSSSLQQIKLADFGLATYVK PGQSLHGTVGSPFYIAPEVLSGGYNQTADVWSAGVILYILLSGMPPFWGKTKSQIFNAVRAADLRFPSNLWDRVTNSAKELVRGMLRVDPLQRLTAQQVL EHSWMKDESPCLEETCPHTRESCRDWDNLGSSSFSTLMTRNQDISFGANIMCEEATSTSRSPFSSFLAQPAVVSGGFSFRSNDDTEESSTSPLEFASSSP MSSMLSFAFFDPNPALDVTANTCRVDAVLGEANLSLCCGGEVVVEQQHKTSEFKRAGGTIGTRILGMHSKRNRTIGLGEREQLDLMVTESVIRWASCTNL PTASSLRSSLVC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G12580		PEPKR1	phosphoenolpyruvate carboxylas...		Lus10038889 [exp]	0	1
AT1G12580		PEPKR1	phosphoenolpyruvate carboxylas...		Lus10015009 [exp]	1.0	0.9320
AT5G05360			unknown protein		Lus10012213 [exp]	2.4	0.8964
AT3G29010			Biotin/lipoate A/B protein lig...		Lus10003218 [exp]	3.9	0.8963
AT3G03740		ATBPM4	BTB-POZ and MATH domain 4 (.1)		Lus10003365 [exp]	13.3	0.8942
AT3G01090		AKIN10, SnRK1.1	SNF1-RELATED PROTEIN KINASE 1....		Lus10012696 [exp]	13.8	0.8873
AT1G24120		ARL1	ARG1-like 1 (.1)		Lus10030827 [exp]	17.9	0.8870
AT2G42500		PP2A-3, PP2A-4	protein phosphatase 2A-3 (.1.2...		Lus10039185 [exp]	18.0	0.8541
AT5G53070			Ribosomal protein L9/RNase H1 ...		Lus10022383 [exp]	22.0	0.8803
AT4G36920	AP2_ERF	FL1, FLO2, AP2	FLORAL MUTANT 2, FLOWER 1, APE...		Lus10009374 [exp]	22.8	0.8169
AT1G63855			Putative methyltransferase fam...		Lus10028415 [exp]	23.0	0.8760

Compare expression of checked genes

Lus10038889 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.