Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51980 549 / 0 C3HZnF Transducin/WD40 repeat-like superfamily protein (.1.2) AT4G25440 546 / 0 C3HZnF ZFWD1 zinc finger WD40 repeat protein 1 (.1) AT5G49200 341 / 4e-115 C3HZnF WD-40 repeat family protein / zfwd4 protein (ZFWD4) (.1) AT5G40880 340 / 3e-114 WD-40 repeat family protein / zfwd3 protein (ZFWD3) (.1) AT3G49660 73 / 2e-14 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT1G24130 70 / 6e-13 Transducin/WD40 repeat-like superfamily protein (.1) AT1G24530 67 / 4e-12 Transducin/WD40 repeat-like superfamily protein (.1) AT1G47610 67 / 5e-12 Transducin/WD40 repeat-like superfamily protein (.1) AT3G50390 66 / 8e-12 Transducin/WD40 repeat-like superfamily protein (.1) AT4G02730 66 / 1e-11 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032066 [exp] 329 / 2e-110 AT4G25440 343 / 5e-115 zinc finger WD40 repeat protein 1 (.1) Lus10021656 [exp] 325 / 6e-108 AT4G25440 329 / 9e-109 zinc finger WD40 repeat protein 1 (.1) Lus10033255 [exp] 290 / 2e-94 AT5G51980 285 / 3e-91 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10021648 [exp] 285 / 9e-93 AT4G25440 321 / 1e-105 zinc finger WD40 repeat protein 1 (.1) Lus10014595 [exp] 280 / 9e-88 AT5G14250 445 / 3e-150 FUSCA 11, COP9 SIGNALOSOME SUBUNIT 3, CONSTITUTIVE PHOTOMORPHOGENIC 13, Proteasome component (PCI) domain protein (.1), Proteasome component (PCI) domain protein (.2) Lus10032062 [exp] 218 / 5e-68 AT4G25440 212 / 3e-65 zinc finger WD40 repeat protein 1 (.1) Lus10034716 [exp] 208 / 2e-64 AT5G51980 217 / 5e-67 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10001652 [exp] 189 / 7e-59 AT5G51980 192 / 2e-59 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10021640 [exp] 163 / 2e-48 AT4G25440 185 / 7e-57 zinc finger WD40 repeat protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G134800 [exp] 568 / 0 AT4G25440 600 / 0.0 zinc finger WD40 repeat protein 1 (.1) Potri.015G137200 [exp] 568 / 0 AT4G25440 587 / 0.0 zinc finger WD40 repeat protein 1 (.1) Potri.014G077800 [exp] 385 / 4e-131 AT5G51980 391 / 5e-132 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.006G239600 [exp] 76 / 7e-15 AT3G50390 280 / 4e-89 Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G009500 [exp] 70 / 3e-13 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G051900 [exp] 67 / 2e-12 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.004G148400 [exp] 67 / 4e-12 AT3G18950 539 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G130400 [exp] 67 / 4e-12 AT2G26490 632 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.012G076000 [exp] 67 / 5e-12 AT5G50120 417 / 5e-145 Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G148500 [exp] 66 / 8e-12 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat CL0537 [flax] [poplar] CCCH_zf PF00642 [flax] [poplar] zf-CCCH Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Representative CDS sequence Show only first row Show all	>Lus10038890 pacid=23150350 polypeptide=Lus10038890 locus=Lus10038890.g ID=Lus10038890.BGIv1.0 annot-version=v1.0 ATGATTCGTCGAAGCCACAGAATCAGAAAGTGTGCTACCATTGGCGGGCCGTCTACCTGGGGACGGCCAGGGAATAGTAGGGTGGTTAGGAAGACGGAGA AAGTCTGTACTTACTGGGTACAGGGGAACTGTACTTATGGGGATAATTGCAGATTTTTACATGGGTGGAGCTTAGGGGAGAGCTTTGGTTTGTTGACTCA GCTTGAAGGTCATCAGAAAGTTGTCAGTGGGATTGCTTTGCCATCTGGTTCTGATAAGCTTTACACTGGGAGCAAAGATGAGACAGTTAGAGTTTGGGAC TGCCAATCTGGCCAGTGTATGGGAGTTATCAACCTTGGTGGTGAAGTAGGTTGTATGATCAGTGAAGGTCCATGGCTGTTTGTCGGTATGCCGAATCTTG TTAAGGCATGGAACTTGCAGACAAATGCTGATCTAAGTCTTAATGGACCTGTTGGGCAAGTTTACGCTATGGTCGTGGGAAACGATCTGCTATTCGCTGG CACGCAGGATTCGGCAATATTGGCGTGGAAATATAACGCAGGATCAGCGGTCTTCGAGCCGGCTGCATCGCTCAAGGGGCATTCACTTGCTGTTGTCTCC TTAGTCGTTGGAGCTAACAGACTCTTTTCTGGTTCCATGGACAATTCTATTAAGGTATGGAACCTCGAGACGTTACAATGTATACAAACGTTGAATGCTC ATACTGCAGTTGTCATGTCTCTTCTTTGCTGGGATCAGTTTCTTTTGTCAAGTTCGTTGGACCAGACGATAAAGGTTTGGGCTGCCACAGAAGGTGGGAA CTTGGAAGTAACCTACACTCACAAAGAAGAACATGGACTCCTAACCCTATGTGGACTGCATGATTTGGAAGGCAAACCAATCCTGCTATGCTCATCTAAC GACAACACAGTCCGGATATACGACCTGCCATCGTTTTCGGAGAGGAGTAAGATATTCTCGAAACAGGAGATCCGGGCGATCCAGGCAGGCCCAGCCGGAC TGTTCTTCACCGGTGATGGAACCGGACAAGTGAGGGTATGGAACTGTAAAGCTGACCAACAGCCAGCTGCTCCGGCCACGGCCACGTGA
AA sequence Show only first row Show all	>Lus10038890 pacid=23150350 polypeptide=Lus10038890 locus=Lus10038890.g ID=Lus10038890.BGIv1.0 annot-version=v1.0 MIRRSHRIRKCATIGGPSTWGRPGNSRVVRKTEKVCTYWVQGNCTYGDNCRFLHGWSLGESFGLLTQLEGHQKVVSGIALPSGSDKLYTGSKDETVRVWD CQSGQCMGVINLGGEVGCMISEGPWLFVGMPNLVKAWNLQTNADLSLNGPVGQVYAMVVGNDLLFAGTQDSAILAWKYNAGSAVFEPAASLKGHSLAVVS LVVGANRLFSGSMDNSIKVWNLETLQCIQTLNAHTAVVMSLLCWDQFLLSSSLDQTIKVWAATEGGNLEVTYTHKEEHGLLTLCGLHDLEGKPILLCSSN DNTVRIYDLPSFSERSKIFSKQEIRAIQAGPAGLFFTGDGTGQVRVWNCKADQQPAAPATAT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G51980	C3HZnF		Transducin/WD40 repeat-like su...		Lus10038890 [exp]	0	1
AT5G24070			Peroxidase superfamily protein...		Lus10022962 [exp]	9.2	0.8919
					Lus10025963 [exp]	22.8	0.8886
AT1G53130		GRI	GRIM REAPER, Stigma-specific S...		Lus10005544 [exp]	23.2	0.8895
AT1G04850			ubiquitin-associated (UBA)/TS-...		Lus10037827 [exp]	30.3	0.8821
AT2G17080			Arabidopsis protein of unknown...		Lus10023963 [exp]	35.0	0.8805
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Lus10038057 [exp]	39.1	0.8816
AT1G68150	WRKY	ATWRKY9, WRKY9	WRKY DNA-binding protein 9 (.1...		Lus10035971 [exp]	42.4	0.8824
AT3G11470			4'-phosphopantetheinyl transfe...		Lus10021344 [exp]	49.4	0.8545
					Lus10021703 [exp]	52.0	0.8591
AT3G12120		FAD2	fatty acid desaturase 2 (.1.2)		Lus10021047 [exp]	55.5	0.8771

Compare expression of checked genes

Lus10038890 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.