Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51920 535 / 0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT4G22980 379 / 6e-125 unknown protein AT5G66950 256 / 5e-75 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT4G37100 254 / 5e-74 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT2G23520 247 / 1e-71 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT1G16540 82 / 6e-16 ACI2, ABA3, SIR3, LOS5, ATABA3 SIRTINOL RESISTANT 3, LOW OSMOTIC STRESS 5, ALTERED CHLOROPLAST IMPORT 2, ABA DEFICIENT 3, molybdenum cofactor sulfurase (LOS5) (ABA3) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015013 [exp] 1105 / 0 AT5G51920 570 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10006342 [exp] 399 / 6e-131 AT5G51920 432 / 4e-144 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10022472 [exp] 266 / 3e-78 AT2G23520 1238 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10016776 [exp] 266 / 3e-78 AT2G23520 1229 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10019650 [exp] 257 / 4e-75 AT4G37100 1186 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10000751 [exp] 256 / 5e-75 AT4G37100 1141 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10002958 [exp] 236 / 1e-68 AT5G51920 396 / 5e-130 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10031768 [exp] 87 / 2e-17 AT1G16540 1021 / 0.0 SIRTINOL RESISTANT 3, LOW OSMOTIC STRESS 5, ALTERED CHLOROPLAST IMPORT 2, ABA DEFICIENT 3, molybdenum cofactor sulfurase (LOS5) (ABA3) (.1) Lus10022447 [exp] 77 / 5e-15 AT2G23520 96 / 1e-21 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G137900 [exp] 722 / 0 AT5G51920 464 / 3e-157 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.001G111600 [exp] 581 / 0 AT4G22980 431 / 2e-144 unknown protein Potri.003G120500 [exp] 573 / 0 AT5G51920 487 / 3e-166 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.005G131300 [exp] 266 / 3e-78 AT2G23520 1227 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.007G036100 [exp] 265 / 8e-78 AT2G23520 1236 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.003G172100 [exp] 80 / 8e-16 AT5G51920 91 / 1e-19 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.012G098200 [exp] 78 / 3e-15 AT4G37100 95 / 4e-21 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.015G097000 [exp] 77 / 4e-15 AT4G37100 97 / 9e-22 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.007G066400 [exp] 77 / 2e-14 AT1G16540 1071 / 0.0 SIRTINOL RESISTANT 3, LOW OSMOTIC STRESS 5, ALTERED CHLOROPLAST IMPORT 2, ABA DEFICIENT 3, molybdenum cofactor sulfurase (LOS5) (ABA3) (.1) Potri.001G056400 [exp] 47 / 5e-06 AT5G51920 59 / 1e-10 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [flax] [poplar] PLP_aminotran PF00266 [flax] [poplar] Aminotran_5 Aminotransferase class-V
Representative CDS sequence Show only first row Show all	>Lus10038892 pacid=23150507 polypeptide=Lus10038892 locus=Lus10038892.g ID=Lus10038892.BGIv1.0 annot-version=v1.0 ATGCAGTCACCTTGTCTCAATGAGTACTTTGAGTCATGCCTCCTCCAAGGCTGCTGCCCTTCCCTCCACCCCGAGCCCCTCAACTCGAAACCCACGACGA AAACCACGACCATGTCCACGACTCGTCGCAACTTCGCCACATCAGCAACCGCCTCCTCGAACTTCTCCACAACCAGCTACACAAACCCTGACTCCTTACC TTCCTTACACCACTCATTCATGGAGTTCACCAAGTCCTACCCGCAGTACTCGTCGACCTACTCGGTGGACGAGATTCGAACCCGAGACTACCAGAACCTA TCACAGCATCAATCCAACCACACCTGCCTAGACTACATAGGGATAGGTTTGTTCTCATGTTCACAGATTCAGCAGTCTGTTGACCAGTCAACTGGCCAAT TTGTGTCAGATGTTCCCTTTTTCACAGTCAGTTACAAAGCTGGCAACTTGAAGACTCAGCTCCTTCATGGCGGCCAGGAATCGGAGCTCGAATCCGCCAT GAGGAAAAGGGTCATGAAGTTTATGAACATATCAGGTAAAGATTACAGCTTGGTGTTCACAGCCAACAGGACTTCTGCTTTCAAACTGTTGGCAGAATCC TACCCTTTCGGATCGAAACCCTCGAAAGTTCTGAGTGTTTACGACTATGAGAGCGAGGCAGTCGAAGCCATGAACAGAATCTCAGAGCGAAAAGGAGGTA AAGTTATGTCAGCTGAGTTTTCATGGCCTAGGCTGAGGATCAACTCATCCAAGCTGAAGAAAATGATTGTCAGGAAGAAGAAGCGAAAAGGGGTTTTTGT GTTTCCACTTCATTCAAGGATGACTGGAGCTAGATATCCATATTCATGGATGAAGAAAGCTCAAGAGAATGAATGGCACTTACTTATAGATGCATGTGCT TTAGGTCCTAAAGACATGGACAGCTTCGCACTCGCGTTGATTCGACCGGATTTCATCATCTCGTCGTTCTACAAGATATTCGGGGAGAACCCTTCAGGAT TCGGGTGTCTTTTCGTTAAGAAATCGACCATCCCGGTTCTGGAGGACTACACTGGTGCTGGCATGGTCAGCCTTCTTCCAGGAAAGATTGCTGATGATAA AGTTCAAGACTTTATGTCTAGGATGCAGTTGGGTGAGGTTGATGAAGAAGATCTGGACACTTCGAATTCGTTCTCCGGTCCGATTAATGCTCCGAAATCG GTGAAGATGAAAGAAGCTAGAGCTACAAGCAGTGTTGATAGTAATCAGCAGAAGAAGTTGAAAGTTCAATGCAGGGGATTGGATCAGGTGGATGCATTGG GACTTACAGAGATTACAAACAGGGGAAGGTGCTTGATCAACTGGTTGGTGAATTCGTTGACGAAGCTGAAGCATCCAACGAGTTCGAAAGAGATTCCGTT GGTGAGAATCTACGGTCCGAAAGTGAAGTTCGACAGAGGGCCTGCGTTGGCATTCAATGTGTTTGATTGGAAAGGGGAAAAGATTGAGCCTTTGATGGTG CAGAAGCTAGCTGACCGGAACAGCATTTCGCTCAGCTATGGTTTCCTGCATCATATATCGTTTTCGGACAAGTACGAAGCGGATAAGGCAGCAGTTCTGG AAATGAGAGATGGAAGTGAAAGGAGGAAGAGTGTGAAAGGGAAGGTGGGGATAACGGTTGTGACGATTGCGTTAGGGTTCTTGTCGAATTTCGAGGATGT GTATAGGCTATGGGGGTTTGTAGCTCAGTTCTTGGATGCTGACTTTGTTGAGAAGGCTAACTGGAGGTATACTGGTTTGAACCAGAAGACAGTTGAGGTG TAA
AA sequence Show only first row Show all	>Lus10038892 pacid=23150507 polypeptide=Lus10038892 locus=Lus10038892.g ID=Lus10038892.BGIv1.0 annot-version=v1.0 MQSPCLNEYFESCLLQGCCPSLHPEPLNSKPTTKTTTMSTTRRNFATSATASSNFSTTSYTNPDSLPSLHHSFMEFTKSYPQYSSTYSVDEIRTRDYQNL SQHQSNHTCLDYIGIGLFSCSQIQQSVDQSTGQFVSDVPFFTVSYKAGNLKTQLLHGGQESELESAMRKRVMKFMNISGKDYSLVFTANRTSAFKLLAES YPFGSKPSKVLSVYDYESEAVEAMNRISERKGGKVMSAEFSWPRLRINSSKLKKMIVRKKKRKGVFVFPLHSRMTGARYPYSWMKKAQENEWHLLIDACA LGPKDMDSFALALIRPDFIISSFYKIFGENPSGFGCLFVKKSTIPVLEDYTGAGMVSLLPGKIADDKVQDFMSRMQLGEVDEEDLDTSNSFSGPINAPKS VKMKEARATSSVDSNQQKKLKVQCRGLDQVDALGLTEITNRGRCLINWLVNSLTKLKHPTSSKEIPLVRIYGPKVKFDRGPALAFNVFDWKGEKIEPLMV QKLADRNSISLSYGFLHHISFSDKYEADKAAVLEMRDGSERRKSVKGKVGITVVTIALGFLSNFEDVYRLWGFVAQFLDADFVEKANWRYTGLNQKTVEV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G51920			Pyridoxal phosphate (PLP)-depe...		Lus10038892 [exp]	0	1
AT5G63810		BGAL10	beta-galactosidase 10 (.1)		Lus10025108 [exp]	1.4	0.8602
AT3G50530		CRK	CDPK-related kinase (.1.2)		Lus10009342 [exp]	3.5	0.8580
AT3G52490			Double Clp-N motif-containing ...		Lus10008970 [exp]	4.4	0.8817
AT4G37650	GRAS	SGR7, SHR	SHORT ROOT, SHOOT GRAVITROPISM...		Lus10019281 [exp]	6.3	0.8217
AT4G11740		SAY1	Ubiquitin-like superfamily pro...		Lus10041365 [exp]	6.3	0.8345
AT3G52490			Double Clp-N motif-containing ...		Lus10021291 [exp]	11.1	0.8428
AT3G33520		SUF3, ESD1, ATA...	SUPPRESSOR OF FRI 3, EARLY IN ...		Lus10006654 [exp]	11.6	0.7811
AT5G57480			P-loop containing nucleoside t...		Lus10025479 [exp]	12.8	0.8033
AT2G19090			Protein of unknown function (D...		Lus10020008 [exp]	16.5	0.8246
AT1G62050			Ankyrin repeat family protein ...		Lus10003524 [exp]	16.8	0.8290

Compare expression of checked genes

Lus10038892 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.