Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51880 291 / 5e-100 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015015 [exp] 175 / 6e-56 AT5G51880 106 / 1e-29 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10015014 [exp] 119 / 3e-34 AT5G51880 99 / 3e-27 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G135300 [exp] 328 / 1e-114 AT5G51880 322 / 3e-112 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.012G133100 [exp] 215 / 1e-69 AT5G51880 211 / 7e-68 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10038893 pacid=23150425 polypeptide=Lus10038893 locus=Lus10038893.g ID=Lus10038893.BGIv1.0 annot-version=v1.0 ATGGCGGAACCCGGTGGCGCGAGGAAGCGAAAAGCAACAAGCGATAAGAAAGACGCCGCCGCTGGCGTATCTAAACAAGCACCGCCGAGCTCGATCTGGC CCGCCATCAAACCCAAGAAGAATCTCCAAGTCACTCGCCTCAAGGACTCCGATCTCTTCACCGTGTCCGAGTTCTTCACCTCGTCCGAATCGAAGGCTTT CATCGGAATTGCGGAGTCTAAGGGGTTCGTTCATCAGGGGAGTCTCGGACCGACGAAAGGCGAGGCTTATAGAGACAACGATAGGATCTCTGTGGATGAT CCAGCTCTCGCAAGCTCAATTTGGGAGTCTGGGTTGAGCGGATTGTTTGCTGATATCAAGATCAGAGGGAAAGTTGCTGTTGGGTTGAACCCGAATATCA GATTCTACAGGTACAAGGTTGGTCAGCGTTTCGGGCGCCATATCGACGAAAGTGTCGACCTTGAGGGCGGGAAGCGGACTTACTATACGCTTTTGATATA CTTGAGCGGCGGTGGTGCTTCGAAAGGGAAAGCTAATAGCCAGAAGGATACGTCAATGGAGCCTCTAGTCGGAGGGGAAACCGTGTTCTATGGTGGTTGG AGGAACAATGTTGTAGCCGAGGTGGCTCCGGCGGAAGGGATGGCTCTGTTCCACATTCACGGCGACAAATGCATGCTGCACGAAGCGAGGAATGTGATGA AAGGCGTCAAGTATGTGTTCCGGTCCGATGTCGTCTTCGCTTGA
AA sequence Show only first row Show all	>Lus10038893 pacid=23150425 polypeptide=Lus10038893 locus=Lus10038893.g ID=Lus10038893.BGIv1.0 annot-version=v1.0 MAEPGGARKRKATSDKKDAAAGVSKQAPPSSIWPAIKPKKNLQVTRLKDSDLFTVSEFFTSSESKAFIGIAESKGFVHQGSLGPTKGEAYRDNDRISVDD PALASSIWESGLSGLFADIKIRGKVAVGLNPNIRFYRYKVGQRFGRHIDESVDLEGGKRTYYTLLIYLSGGGASKGKANSQKDTSMEPLVGGETVFYGGW RNNVVAEVAPAEGMALFHIHGDKCMLHEARNVMKGVKYVFRSDVVFA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G51880			2-oxoglutarate (2OG) and Fe(II...		Lus10038893 [exp]	0	1
AT5G28040	GeBP		DNA-binding storekeeper protei...		Lus10000940 [exp]	3.5	0.8872
AT5G67490			unknown protein		Lus10000389 [exp]	5.3	0.8418
AT1G01200		ATRAB-A3, AtRAB...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Lus10030221 [exp]	6.2	0.8361
AT4G31750		WIN2	HOPW1-1-interacting 2 (.1)		Lus10026239 [exp]	6.9	0.8728
AT5G50380		ATEXO70F1	exocyst subunit exo70 family p...		Lus10022459 [exp]	7.1	0.8700
AT5G03990			unknown protein		Lus10016362 [exp]	7.3	0.8700
AT5G42300		UBL5	ubiquitin-like protein 5 (.1)		Lus10002228 [exp]	7.3	0.8770
AT5G07840		PIA1	phytochrome interacting ankyri...		Lus10033816 [exp]	7.5	0.8720
AT1G04760		ATVAMP726	vesicle-associated membrane pr...		Lus10036203 [exp]	8.0	0.8518
AT1G33520		MOS2	modifier of snc1, 2, D111/G-pa...		Lus10004541 [exp]	8.1	0.8249

Compare expression of checked genes

Lus10038893 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.