Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51810 354 / 7e-121 AT2353, GA20OX2, ATGA20OX2 gibberellin 20 oxidase 2 (.1) AT4G25420 353 / 2e-120 AT2301, GA5, ATGA20OX1 GA REQUIRING 5, ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G07200 343 / 2e-116 ATGA20OX3, YAP169 ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 3, gibberellin 20-oxidase 3 (.1) AT1G60980 337 / 4e-114 ATGA20OX4 gibberellin 20-oxidase 4 (.1) AT1G44090 228 / 2e-71 GA2OX5, ATGA20OX5 ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 5, gibberellin 20-oxidase 5 (.1) AT5G05600 144 / 2e-39 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G13610 132 / 3e-35 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G24530 126 / 4e-33 DMR6 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G19000 124 / 6e-33 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT3G11180 125 / 2e-32 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015016 [exp] 511 / 0 AT4G25420 494 / 3e-176 GA REQUIRING 5, ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10027399 [exp] 428 / 7e-150 AT4G25420 514 / 0.0 GA REQUIRING 5, ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10006722 [exp] 426 / 4e-149 AT1G60980 489 / 5e-174 gibberellin 20-oxidase 4 (.1) Lus10031671 [exp] 426 / 2e-148 AT5G07200 508 / 1e-180 ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 3, gibberellin 20-oxidase 3 (.1) Lus10006350 [exp] 422 / 1e-147 AT4G25420 486 / 1e-172 GA REQUIRING 5, ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10041390 [exp] 340 / 4e-115 AT5G51810 468 / 2e-165 gibberellin 20 oxidase 2 (.1) Lus10036539 [exp] 339 / 7e-115 AT5G51810 464 / 3e-164 gibberellin 20 oxidase 2 (.1) Lus10015573 [exp] 136 / 8e-37 AT5G24530 510 / 0.0 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10015252 [exp] 135 / 3e-36 AT1G17020 375 / 1e-129 senescence-related gene 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G134600 [exp] 389 / 2e-134 AT5G51810 525 / 0.0 gibberellin 20 oxidase 2 (.1) Potri.012G132400 [exp] 384 / 2e-132 AT5G51810 522 / 0.0 gibberellin 20 oxidase 2 (.1) Potri.002G151300 [exp] 352 / 3e-120 AT4G25420 503 / 1e-179 GA REQUIRING 5, ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.014G073700 [exp] 339 / 1e-114 AT4G25420 481 / 9e-171 GA REQUIRING 5, ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.007G103800 [exp] 273 / 7e-89 AT5G51810 408 / 6e-142 gibberellin 20 oxidase 2 (.1) Potri.005G065400 [exp] 266 / 2e-86 AT5G51810 402 / 8e-140 gibberellin 20 oxidase 2 (.1) Potri.005G184200 [exp] 249 / 4e-80 AT5G51810 383 / 1e-132 gibberellin 20 oxidase 2 (.1) Potri.005G184400 [exp] 249 / 5e-80 AT5G51810 380 / 5e-131 gibberellin 20 oxidase 2 (.1) Potri.012G006300 [exp] 139 / 6e-38 AT5G24530 506 / 0.0 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.004G146000 [exp] 135 / 4e-36 AT3G19000 357 / 3e-122 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10038894 pacid=23150474 polypeptide=Lus10038894 locus=Lus10038894.g ID=Lus10038894.BGIv1.0 annot-version=v1.0 ATGGCGGTGGACACCGTGCAATCACCACCTCCGGCCAAACCCAACTGCTTAATCTTCGACGCCAAACTCCTCAACAACGAACCCTCATCCAACATTCCCC AGCAGTTCATCTGGCCGGATCACGAGCGGCCTCGAGCCAATGCTCCGGAGCTCCAAGTCCCCGTGATCGACCTCTCCGGTGGCGGCTGCGGAAGCGACTC AGTCGCAGCGAAACTCGCGGGCGATGCGTGCCGGAAGCACGGGTTCTTCCTTGTTGTTAACCATGGTGTGGATAGGCGTCTGCTCTCCGACGCGCATGAG TGTATGGATAGCTTCTTCGGGTTACCGCTTTCAGAGAAGCAGAAGGCGCGGAGGAAGCTCGGCGAGAGCGCCGGCTATGCCAGTAGCTTCACCGGCAGAT TCTCGTCCAAGCTCCCCTGGAAAGAAACGCTGTCGCTTCCGTTCAATGCTGCGGAAAATTCGCGTAAGATCGTCAGGGACTATCTCGTCAGCACAATGGG TCGAGATTTCTCCAATTTCGGCCGAAACGATCAACCGAATTCGACAGAAATGCTGACGGATTTGTTCGGTTTTTCGAGCAGGAACGTGTACCAGGAATAC TGCGAATCGATGAGCAAGCTGTCGCTGAGGATCATGGAGCTACTAGGGATGAGCTTGGGGTTGAAGAACAGGGGATATTTCAAGGAATTTTTCGAGGAGA ACGATTCGATAATGAGGCTGAACTATTACCCACCGTGCCAGAAAGCTGACGCTACTCTCGGGACGGGACCTCATTGTGATCCGACGTCGTTGACGATCCT GCACCAGGATCAAGTTGCCGGGTTGCAAGTGTTTGTGGACAACGAGTGGCGCTCTATCAAACCCAATGCCGACGCCTTTGTCGTCAACATTGGCGACACT TTCATGAGCGGTGGTGAGCAAGACGACGACAAGAAAGTCACTAGCATTCTTCTTGTGTCCGAAGAGCAACAAAGTAGTGGAGCCTCCAAAGGAGCTATTG AACGAGGGCAACCCAAGAGTGTACCCAAATTTCACATGGCCGACGTTCCTGGAGTTTACCCAAAAGCACTATCGAGCCGACATGAACACCTTGGAGGCCT TCAAGATTTGGCTTCATGA
AA sequence Show only first row Show all	>Lus10038894 pacid=23150474 polypeptide=Lus10038894 locus=Lus10038894.g ID=Lus10038894.BGIv1.0 annot-version=v1.0 MAVDTVQSPPPAKPNCLIFDAKLLNNEPSSNIPQQFIWPDHERPRANAPELQVPVIDLSGGGCGSDSVAAKLAGDACRKHGFFLVVNHGVDRRLLSDAHE CMDSFFGLPLSEKQKARRKLGESAGYASSFTGRFSSKLPWKETLSLPFNAAENSRKIVRDYLVSTMGRDFSNFGRNDQPNSTEMLTDLFGFSSRNVYQEY CESMSKLSLRIMELLGMSLGLKNRGYFKEFFEENDSIMRLNYYPPCQKADATLGTGPHCDPTSLTILHQDQVAGLQVFVDNEWRSIKPNADAFVVNIGDT FMSGGEQDDDKKVTSILLVSEEQQSSGASKGAIERGQPKSVPKFHMADVPGVYPKALSSRHEHLGGLQDLAS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G51810		AT2353, GA20OX2...	gibberellin 20 oxidase 2 (.1)		Lus10038894 [exp]	0	1
AT4G33550			Bifunctional inhibitor/lipid-t...		Lus10005011 [exp]	1.4	0.7956
AT4G25420		AT2301, GA5, AT...	GA REQUIRING 5, ARABIDOPSIS TH...		Lus10015016 [exp]	3.5	0.8101
AT2G31600			unknown protein		Lus10025558 [exp]	4.7	0.7030
AT3G51770		ATEOL1, ETO1	ARABIDOPSIS ETHYLENE OVERPRODU...		Lus10012510 [exp]	10.8	0.7211
AT2G02450	NAC	LOV1, ANAC034, ...	LONG VEGETATIVE PHASE 1, Arabi...		Lus10008419 [exp]	15.0	0.7453
AT1G49230			RING/U-box superfamily protein...		Lus10006785 [exp]	15.1	0.7872
AT3G51760			Protein of unknown function (D...		Lus10022661 [exp]	15.9	0.7274
AT1G26920			unknown protein		Lus10037195 [exp]	19.0	0.7628
AT5G22090			Protein of unknown function (D...		Lus10004098 [exp]	19.9	0.7786
AT1G22770		FB, GI	gigantea protein (GI) (.1)		Lus10028731 [exp]	22.9	0.6939

Compare expression of checked genes

Lus10038894 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.