Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45510 551 / 0 CYP704A2 "cytochrome P450, family 704, subfamily A, polypeptide 2", cytochrome P450, family 704, subfamily A, polypeptide 2 (.1) AT2G44890 519 / 0 CYP704A1 "cytochrome P450, family 704, subfamily A, polypeptide 1", cytochrome P450, family 704, subfamily A, polypeptide 1 (.1.2) AT1G69500 392 / 3e-131 CYP704B1 "cytochrome P450, family 704, subfamily B, polypeptide 1", cytochrome P450, family 704, subfamily B, polypeptide 1 (.1) AT3G56630 331 / 7e-108 CYP94D2 "cytochrome P450, family 94, subfamily D, polypeptide 2", cytochrome P450, family 94, subfamily D, polypeptide 2 (.1) AT5G23190 331 / 4e-107 CYP86B1 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) AT5G08250 328 / 1e-106 Cytochrome P450 superfamily protein (.1) AT1G34540 322 / 1e-104 CYP94D1 "cytochrome P450, family 94, subfamily D, polypeptide 1", cytochrome P450, family 94, subfamily D, polypeptide 1 (.1) AT2G45970 314 / 1e-100 CYP86A8, LCR LACERATA, "cytochrome P450, family 86, subfamily A, polypeptide 8", cytochrome P450, family 86, subfamily A, polypeptide 8 (.1) AT1G63710 313 / 1e-100 CYP86A7 "cytochrome P450, family 86, subfamily A, polypeptide 7", cytochrome P450, family 86, subfamily A, polypeptide 7 (.1) AT1G01600 309 / 1e-98 CYP86A4 "cytochrome P450, family 86, subfamily A, polypeptide 4", cytochrome P450, family 86, subfamily A, polypeptide 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015018 [exp] 961 / 0 AT2G45510 586 / 0.0 "cytochrome P450, family 704, subfamily A, polypeptide 2", cytochrome P450, family 704, subfamily A, polypeptide 2 (.1) Lus10037999 [exp] 541 / 0 AT2G45510 539 / 0.0 "cytochrome P450, family 704, subfamily A, polypeptide 2", cytochrome P450, family 704, subfamily A, polypeptide 2 (.1) Lus10009232 [exp] 541 / 0 AT2G45510 639 / 0.0 "cytochrome P450, family 704, subfamily A, polypeptide 2", cytochrome P450, family 704, subfamily A, polypeptide 2 (.1) Lus10037157 [exp] 417 / 5e-141 AT1G69500 868 / 0.0 "cytochrome P450, family 704, subfamily B, polypeptide 1", cytochrome P450, family 704, subfamily B, polypeptide 1 (.1) Lus10036772 [exp] 413 / 3e-139 AT1G69500 863 / 0.0 "cytochrome P450, family 704, subfamily B, polypeptide 1", cytochrome P450, family 704, subfamily B, polypeptide 1 (.1) Lus10010193 [exp] 332 / 1e-107 AT5G23190 741 / 0.0 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) Lus10017394 [exp] 330 / 9e-107 AT5G23190 739 / 0.0 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) Lus10040986 [exp] 319 / 2e-102 AT5G23190 751 / 0.0 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) Lus10032278 [exp] 317 / 4e-101 AT1G63710 792 / 0.0 "cytochrome P450, family 86, subfamily A, polypeptide 7", cytochrome P450, family 86, subfamily A, polypeptide 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G131200 [exp] 639 / 0 AT2G44890 511 / 7e-178 "cytochrome P450, family 704, subfamily A, polypeptide 1", cytochrome P450, family 704, subfamily A, polypeptide 1 (.1.2) Potri.014G072000 [exp] 586 / 0 AT2G45510 706 / 0.0 "cytochrome P450, family 704, subfamily A, polypeptide 2", cytochrome P450, family 704, subfamily A, polypeptide 2 (.1) Potri.014G072100 [exp] 556 / 0 AT2G45510 563 / 0.0 "cytochrome P450, family 704, subfamily A, polypeptide 2", cytochrome P450, family 704, subfamily A, polypeptide 2 (.1) Potri.014G072300 [exp] 546 / 0 AT2G45510 563 / 0.0 "cytochrome P450, family 704, subfamily A, polypeptide 2", cytochrome P450, family 704, subfamily A, polypeptide 2 (.1) Potri.008G088900 [exp] 399 / 6e-134 AT1G69500 868 / 0.0 "cytochrome P450, family 704, subfamily B, polypeptide 1", cytochrome P450, family 704, subfamily B, polypeptide 1 (.1) Potri.016G031700 [exp] 336 / 6e-110 AT3G56630 629 / 0.0 "cytochrome P450, family 94, subfamily D, polypeptide 2", cytochrome P450, family 94, subfamily D, polypeptide 2 (.1) Potri.006G033600 [exp] 330 / 3e-107 AT3G56630 576 / 0.0 "cytochrome P450, family 94, subfamily D, polypeptide 2", cytochrome P450, family 94, subfamily D, polypeptide 2 (.1) Potri.007G072100 [exp] 323 / 5e-104 AT5G23190 799 / 0.0 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) Potri.005G092200 [exp] 320 / 1e-102 AT5G23190 788 / 0.0 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) Potri.014G085800 [exp] 316 / 2e-101 AT2G45970 866 / 0.0 LACERATA, "cytochrome P450, family 86, subfamily A, polypeptide 8", cytochrome P450, family 86, subfamily A, polypeptide 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10038896 pacid=23150678 polypeptide=Lus10038896 locus=Lus10038896.g ID=Lus10038896.BGIv1.0 annot-version=v1.0 ATGATGAAGGTTCTTGTTGTGGCCTCTGTCGTGTTCTTGCTCGGTCTGGGTTATATTCATACCACTCTCGTAATAGTTCTTCTCGGTTTGTTGATCTTTG TTGTTGTAGCGTTTGCAGCGAAGTATCTGTTGTTCTACATCAAGGAATCTGTGACGAGTCGTCATCAGCGGCGGCCTCCCATTGCCGGTCCGATTCTGGT CCAGCTCATCCACTACGATTCGCTCTTCAACTACCAAACATCTCTGGCTAAAAAACACAAGACTTACCGCCTCCTCACTCCTTCTCACAGTGAAGTTTAT ACAGTGGATCCTGCTAATGTTGAATACATACTGAAAACCAACTTCTCCAACTATGGAAAGGGGTCTTATAATCTTGGGATTATGAATGATCTCTTTGGGG ATGGTATTTTCGCCACTGATGGTGATAAATGGCGCCACCAGAGGAAGCTTGCTAGCCATGAATTCTCAACTAAAGTTCTCAGGGACTTCAGCTCTAACGT TTTCCGGGCCAACTCTGCGAAGTTGGCGTCAAAGATCGGTGTCGCTGCAGCAGCTACTCAGGCCATAGATTTGCAGGATATGCTGATGAAATCAACTCTA GACACGATGTTCAAGGTGGGATTTGGGATGGATCTCAACTCTTTATCTGGGTCTGATAACTTGGACCAGCAATTCGCCAGAGCATTCGACGAGGCCAATG CCATTACATTCCGAAGGTTCGTCGATTTGATATGGAAGCTCAAGAAGGTCTTCAACATCGGCTTGGAAGGCCGTCTTAGGCAGAGCATGAAAACCATTGA TGCGTTCATATACCAAGTGATTCAACTCAAGAAGGAACAGATGATGAAAATTGGAGATGACATTCATGTTGAGAAGAAAGACATACTGTCAAGGTTCCTG CTGGAGAGCAAGAAAGACCGAGAAAACATGACCGACAAGTATCTGAGAGACATATCTCTAAACTTCGTCATAGCCGGGAAAGACACGACTGCAAATTCAC TCACTTGGTTATTTTACTTGCTCTGCAAGCACCCTCTGGTGCAAGAAAAGGTTGCTCAGGAAGTAAGGGAATCAACAACAACATTAGTAGGTGACGTCTC ACCGGATGAATTCGTCGAGCTCCTGACTCAGGAATCCCTGGACAAGATGCACTACCTTCATGCAGCTCTAACAGAGACCCTCAGGCTGCACCCTGCAGTT CCCGTGGACGGGAAGAGCGCTGAAGAAGATGACATTCTGCCGGATGGATACAAAGTGAGAAAGGGAGATGGTATCACCTACATGGCTTACGCTATGGGAA GGATGGCTTTCATTTGGGGAGAAGACGCAGAGGAGTTCCGACCGGAGAGATGGCTGGACGAGTATGGCATGTTCAAGCCGGAAAGTCCCTTCAAGTTCAC TACATTTCATGCGGGGCCGCGGATTTGCCTGGGGAAGGAGTTTGCATACAGGCAAATGAAGATCTTTGCAGCAACTTTACTTTACTTGTTCAAGTTCAAG CTTGTGGATGAGAGGAAAGTAGCAAGTTACCAGCTCATGTTCACTCTTCACATGGCTGGTGGCCTCCATTTGCTTGCACTTCCTAGGTCCTAA
AA sequence Show only first row Show all	>Lus10038896 pacid=23150678 polypeptide=Lus10038896 locus=Lus10038896.g ID=Lus10038896.BGIv1.0 annot-version=v1.0 MMKVLVVASVVFLLGLGYIHTTLVIVLLGLLIFVVVAFAAKYLLFYIKESVTSRHQRRPPIAGPILVQLIHYDSLFNYQTSLAKKHKTYRLLTPSHSEVY TVDPANVEYILKTNFSNYGKGSYNLGIMNDLFGDGIFATDGDKWRHQRKLASHEFSTKVLRDFSSNVFRANSAKLASKIGVAAAATQAIDLQDMLMKSTL DTMFKVGFGMDLNSLSGSDNLDQQFARAFDEANAITFRRFVDLIWKLKKVFNIGLEGRLRQSMKTIDAFIYQVIQLKKEQMMKIGDDIHVEKKDILSRFL LESKKDRENMTDKYLRDISLNFVIAGKDTTANSLTWLFYLLCKHPLVQEKVAQEVRESTTTLVGDVSPDEFVELLTQESLDKMHYLHAALTETLRLHPAV PVDGKSAEEDDILPDGYKVRKGDGITYMAYAMGRMAFIWGEDAEEFRPERWLDEYGMFKPESPFKFTTFHAGPRICLGKEFAYRQMKIFAATLLYLFKFK LVDERKVASYQLMFTLHMAGGLHLLALPRS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45510		CYP704A2	"cytochrome P450, family 704, ...		Lus10038896 [exp]	0	1
AT1G76150		ECH2, ATECH2	enoyl-CoA hydratase 2 (.1)		Lus10005648 [exp]	2.8	0.9606
AT5G65030			unknown protein		Lus10026048 [exp]	3.2	0.9624
AT1G12780		ATUGE1, UGE1	A. THALIANA UDP-GLC 4-EPIMERAS...		Lus10029572 [exp]	3.6	0.9760
AT1G67910			unknown protein		Lus10023632 [exp]	4.6	0.9614
AT1G12780		ATUGE1, UGE1	A. THALIANA UDP-GLC 4-EPIMERAS...		Lus10002246 [exp]	5.5	0.9708
AT5G14420		RGLG2	RING domain ligase2 (.1.2.3.4)		Lus10011405 [exp]	7.1	0.9394
AT1G17020		ATSRG1, SRG1	senescence-related gene 1 (.1)		Lus10011979 [exp]	7.1	0.9671
AT1G08630		THA1	threonine aldolase 1 (.1.2.3.4...		Lus10014658 [exp]	10.4	0.9616
AT5G23750			Remorin family protein (.1.2)		Lus10001477 [exp]	12.4	0.9394
AT1G10070		ATBCAT-2	branched-chain amino acid tran...		Lus10028247 [exp]	14.0	0.9630

Compare expression of checked genes

Lus10038896 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.