Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51740 501 / 3e-176 Peptidase family M48 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015019 [exp] 833 / 0 AT5G51740 498 / 4e-175 Peptidase family M48 family protein (.1) Lus10031682 [exp] 101 / 8e-26 AT5G51740 107 / 4e-29 Peptidase family M48 family protein (.1) Lus10032437 [exp] 88 / 3e-21 AT5G51740 81 / 1e-19 Peptidase family M48 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G131100 [exp] 566 / 0 AT5G51740 565 / 0.0 Peptidase family M48 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0126 [flax] [poplar] Peptidase_MA PF01435 [flax] [poplar] Peptidase_M48 Peptidase family M48
Representative CDS sequence Show only first row Show all	>Lus10038897 pacid=23150348 polypeptide=Lus10038897 locus=Lus10038897.g ID=Lus10038897.BGIv1.0 annot-version=v1.0 ATGGCGGTTTACAGGCGAGCTAAGCTTGCCATCGACGCTTTCCGCAGTTTCTCTTCTCACGGTCCTTCAATCCGAGATTCAGCTTCGAGAATCCGCGCCA ATGGCGCCACGACGATCATTTCTCCCGATCCAGCTAAGTCCTCCACCTCTCCCGTTTCTCAGATTTTTGGTTTAGGCTTACTAGGCTCGAGATGTCAGTC CGCAGTCGTGAATAGTAGACGAGTCGTAGTTCCAAACTCCGCTCCGTTCGCCGGCGGTGGCGGAGGAGGAGGATTTAAGCGGTTCTATTACGTGGACAAC CGCCGCGTACAGCACTTCAAGCCTCGGGGATTCCGGCGGTGGTTTCAGAACCCTAGGAACGTGATGACTGTTGTTCTGCTCGGTTCTGGAGTTGTAATCA CGGTCTACTTGGGGAATCTGGAGACAGTTCCTTACACGAAGAGGAAGCACTTCGTGCTGTTGAGCAGCACGATGGAGAGGAGCATGGGTGAGGCTCAGTT TCAGAAGTTGAAAGCCTCGTTCAAAGGCCAAATCCTGCCTGCTATTCACCCTGATAGTATTAAGATTCGTGTGATTGCCAAGGATATCATTGAGGCCTTG CAACGTGGGGTGAGGAATGAGCAAGTGTGGACTGATCTGAGCTATTCCTCGGACGAGGTCGATTCGACGAATAAGGGAGGTGGTGGTGCTGGTGAGATGC ACAAGATGTTGAGTGAGGATGAGGCGAAGGTGGAGCCGAATTGGAGTGGAAAAGATGAAGTTCTTGATGATAAGTGGATGGAACAAACTAGGAAATCAGG GAGGAAAGCCGAAACTTCGCATTTGGACGGGCTTAACTGGGAGGTTATTGTTGTTAATCAGGACGTTGTGAATGCCTTCTGTGCACCAGGTGGGAAGATA GTTGTGTTCACTGGTTTGCTCGAGCATTTCAAGACTGATGCTGAGATTGCCACCATTCTTGCTCACGAGATCGGGCATGCTGTGGCGCGACATTCAGCTG AGAAGCTGACTAAGAATGTATGGTTCACCATTCTACAAGTCTTCCTTTTCCAGTTCATAACACCTGATGTCGTCCAGACAATGTCGACTCTGTTCTTAAG TCTTCCATTCGATCGAAAGATGGAAATAGAAGCTGATTACATAGGTCTTCTGCTGATGGCTTCTGCGGGATATGATCCTCGAGTCGCACCAACTGTATAC GAAAAACTGGGGAAGATATCCGGGGAATCCGCGTTGAGAAACTATCTCTCCACGCATCCATCTGGGAAGAAAAGGTCTAGCTTGCTTGCTCAAGCTCGTG TCATGGACGAAGCACTAACCATCTACAGGGAATCACTGTCCGGACGTGGAATTGAAGGCTTCTTCCTGTAA
AA sequence Show only first row Show all	>Lus10038897 pacid=23150348 polypeptide=Lus10038897 locus=Lus10038897.g ID=Lus10038897.BGIv1.0 annot-version=v1.0 MAVYRRAKLAIDAFRSFSSHGPSIRDSASRIRANGATTIISPDPAKSSTSPVSQIFGLGLLGSRCQSAVVNSRRVVVPNSAPFAGGGGGGGFKRFYYVDN RRVQHFKPRGFRRWFQNPRNVMTVVLLGSGVVITVYLGNLETVPYTKRKHFVLLSSTMERSMGEAQFQKLKASFKGQILPAIHPDSIKIRVIAKDIIEAL QRGVRNEQVWTDLSYSSDEVDSTNKGGGGAGEMHKMLSEDEAKVEPNWSGKDEVLDDKWMEQTRKSGRKAETSHLDGLNWEVIVVNQDVVNAFCAPGGKI VVFTGLLEHFKTDAEIATILAHEIGHAVARHSAEKLTKNVWFTILQVFLFQFITPDVVQTMSTLFLSLPFDRKMEIEADYIGLLLMASAGYDPRVAPTVY EKLGKISGESALRNYLSTHPSGKKRSSLLAQARVMDEALTIYRESLSGRGIEGFFL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G51740			Peptidase family M48 family pr...		Lus10038897 [exp]	0	1
AT3G58030			RING/U-box superfamily protein...		Lus10004162 [exp]	1.0	0.8790
AT2G35330			RING/U-box superfamily protein...		Lus10000899 [exp]	2.4	0.8511
AT2G35900			unknown protein		Lus10021249 [exp]	2.8	0.8542
AT5G48150	GRAS	PAT1	phytochrome a signal transduct...		Lus10012323 [exp]	4.9	0.8218
AT5G67190	AP2_ERF	DEAR2	DREB and EAR motif protein 2 (...		Lus10009373 [exp]	4.9	0.8403
AT1G19440		KCS4	3-ketoacyl-CoA synthase 4 (.1)		Lus10001657 [exp]	5.3	0.8340
AT1G30845			unknown protein		Lus10023982 [exp]	5.5	0.7811
AT4G21580			oxidoreductase, zinc-binding d...		Lus10018450 [exp]	5.7	0.8330
AT1G53900			Eukaryotic translation initiat...		Lus10037451 [exp]	7.1	0.8239
AT2G36930	C2H2ZnF		zinc finger (C2H2 type) family...		Lus10023928 [exp]	8.8	0.8233

Compare expression of checked genes

Lus10038897 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.