Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62190 766 / 0 PRH75 DEAD box RNA helicase (PRH75) (.1) AT5G26742 323 / 9e-100 EMB1138 embryo defective 1138, DEAD box RNA helicase (RH3) (.1), DEAD box RNA helicase (RH3) (.2), DEAD box RNA helicase (RH3) (.3) AT3G22330 317 / 3e-99 ATRH53, PMH2 putative mitochondrial RNA helicase 2 (.1) AT3G22310 315 / 3e-98 ATRH9, PMH1 RNA HELICASE 9, putative mitochondrial RNA helicase 1 (.1) AT1G31970 234 / 1e-68 STRS1 STRESS RESPONSE SUPPRESSOR 1, DEA(D/H)-box RNA helicase family protein (.1) AT1G55150 229 / 4e-67 DEA(D/H)-box RNA helicase family protein (.1) AT5G63120 226 / 2e-65 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G01540 223 / 1e-63 ATDRH1, DRH1 ARABIDOPSIS THALIANA DEAD BOX RNA HELICASE 1, DEAD box RNA helicase 1 (.1.2.3.4) AT5G14610 220 / 1e-62 DEAD box RNA helicase family protein (.1.2) AT3G06480 223 / 1e-61 DEAD box RNA helicase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015020 [exp] 1134 / 0 AT5G62190 778 / 0.0 DEAD box RNA helicase (PRH75) (.1) Lus10027388 [exp] 963 / 0 AT5G62190 804 / 0.0 DEAD box RNA helicase (PRH75) (.1) Lus10031683 [exp] 905 / 0 AT5G62190 748 / 0.0 DEAD box RNA helicase (PRH75) (.1) Lus10001057 [exp] 339 / 5e-106 AT5G26742 919 / 0.0 embryo defective 1138, DEAD box RNA helicase (RH3) (.1), DEAD box RNA helicase (RH3) (.2), DEAD box RNA helicase (RH3) (.3) Lus10031012 [exp] 308 / 4e-96 AT3G22330 690 / 0.0 putative mitochondrial RNA helicase 2 (.1) Lus10001425 [exp] 310 / 2e-95 AT5G26742 859 / 0.0 embryo defective 1138, DEAD box RNA helicase (RH3) (.1), DEAD box RNA helicase (RH3) (.2), DEAD box RNA helicase (RH3) (.3) Lus10027268 [exp] 306 / 3e-94 AT3G22330 632 / 0.0 putative mitochondrial RNA helicase 2 (.1) Lus10035410 [exp] 304 / 6e-94 AT3G22330 692 / 0.0 putative mitochondrial RNA helicase 2 (.1) Lus10038975 [exp] 304 / 2e-93 AT3G22330 639 / 0.0 putative mitochondrial RNA helicase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G131000 [exp] 877 / 0 AT5G62190 794 / 0.0 DEAD box RNA helicase (PRH75) (.1) Potri.015G133400 [exp] 867 / 0 AT5G62190 785 / 0.0 DEAD box RNA helicase (PRH75) (.1) Potri.005G000500 [exp] 341 / 1e-106 AT5G26742 885 / 0.0 embryo defective 1138, DEAD box RNA helicase (RH3) (.1), DEAD box RNA helicase (RH3) (.2), DEAD box RNA helicase (RH3) (.3) Potri.005G000100 [exp] 333 / 1e-103 AT5G26742 924 / 0.0 embryo defective 1138, DEAD box RNA helicase (RH3) (.1), DEAD box RNA helicase (RH3) (.2), DEAD box RNA helicase (RH3) (.3) Potri.006G024100 [exp] 302 / 1e-93 AT3G22330 654 / 0.0 putative mitochondrial RNA helicase 2 (.1) Potri.016G023100 [exp] 296 / 5e-91 AT3G22330 648 / 0.0 putative mitochondrial RNA helicase 2 (.1) Potri.003G098800 [exp] 226 / 1e-65 AT1G31970 726 / 0.0 STRESS RESPONSE SUPPRESSOR 1, DEA(D/H)-box RNA helicase family protein (.1) Potri.015G083000 [exp] 222 / 1e-63 AT5G63120 707 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.001G347100 [exp] 225 / 3e-63 AT5G14610 823 / 0.0 DEAD box RNA helicase family protein (.1.2) Potri.012G084600 [exp] 220 / 7e-63 AT5G63120 704 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain CL0221 [flax] [poplar] RRM PF08152 [flax] [poplar] GUCT GUCT (NUC152) domain CL0023 [flax] [poplar] P-loop_NTPase PF00270 [flax] [poplar] DEAD DEAD/DEAH box helicase
Representative CDS sequence Show only first row Show all	>Lus10038898 pacid=23150366 polypeptide=Lus10038898 locus=Lus10038898.g ID=Lus10038898.BGIv1.0 annot-version=v1.0 ATGCCTTCGATTGCTCTGGCTAACGATTCCATGGAGGTCAGTAACAAGAAGGAGAAGAAGATGAAGAAGCTCGCTCTCGAAGCGATGGAGACCGACAATG AGCCGAAGAGCAAGAAGAAGGAGAAGAAGAGCAAGAGGAAGGCTGCGGAGATCGAGAGTGGAGATGATGAGGTGAAGAGCGAGACTAGCTCTGAGCTAGG GGAGCCGGAGAATTCGAAGTCTGAGAAGAAGGAGAAGAAGGCGAAGAAGGCTAAGGTTGATGAAGTGGAGGAGGAAGAGGAAGTTGTGGTGAAGGCTGAT GATCCTAACGCCGTGGATAATTTCAGGATATCTGAGCCGCTGAAGCAGAAGCTTAAGTCCAGGGGGATTGAGGCTTTGTTTCCGATTCAGGCGATGACGT TCACTGATATCCTCGATGGTTGCGATTTGGTCGGCCGTGCTCGCACTGGCCAGGGGAAAACTCTTGCTTTTGTCTTGCCTATACTGGAGTCTCTGATCAA TGGTAAAGCTAAGTCTACCAGGAAGACTGGATATGGAAGGCCACCTAGTGTTCTTGTGCTTCTACCCACTAGAGAGTTGGCTGTTCAGGTGCATGAGGAT TTCAAGGTTTATGGCGAGTCATTGGGCTTGACTTCTTGCTGCTTGTACGGTGGTTCTCCTTACAACCCTCAAGAATCCAGTTTGAAGAGAGGGGTTGATA TAGTGGTTGGAACTCCTGGTCGTATTAAGGATCATATTGAGCGGGGCAATATCAATTTCAGTACCTTGATGTTCCGTGTGCTTGATGAAGCTGATGAAAT GCTCAGGATGGGTTTCGTAGATGACGTGGAGCTGATTCTAGGAAAAGTGGAGGATGTCACCAAAGTTCAAACCCTCCTTTTCAGTGCGACCCTTCCTTCT TGGGTGAAAAATATTTCTTCGAGGTTTCTTAAGCAGGCCAAGAAAACCATAGATCTTGTCGGTAACGAGAAAATGAAGGCCAGTACCAACGTCAGACACA TTGTTCTTCCTTGTACTGCCGCGGCTATTCCTCAGCTGATCCCTGATGTCATTCGTTGTTACAGCAGTGGAGGCCGTTCCATTGTTTTCACAGAGAAAAA GGAGACTGCTAATACACTTTCCGGGTTATTACCTGGTGCTCGTCCTTTGCATGGAGACATTCAGCAATCTCAACGTGAGGTGACTCTATCTGGGTTCAAG TCGGGCAAGTTCATGACATTGGTTGCTACAAATGTGGCTGCTAGGGGTTTGGATATCAACGGTGTACAATTAATCATCCAGTGTGAACCTCCCCGTGATG TAGAAGATTATATCCATCGATCTGGACGCACAGGAAGAGCTGGAAAAACTGGAGTTGCTGTGATGCTCTACGATCCAAGAAGGTCCAATGTGTCCAAGAT TGAGAGAGAATCCGGTGTAAAATTCGAACATGTTTCCGCACCTCAAGCTGCTGATATCGCCCAGTCCATCGGCGTACAAGCTGCTGAATCAATCACCAAG GGATCAGTTGCGTATCACAGTGTGATCCCGGCATTCAAGGCTGCAGCAGAAGAGATGTTGAATGCGTCCGGCATGTCTCCTGTCGATCTCCTTGCTAAAG CTCTAGCCAAGGCTTGCGGTTACACAGACATTAAAACCAGGTCGCTTCTCGGATCCCTCGAAAACCACGTCACACTATTTCTCGATGCTGGAAAACCATT CTACTCGCATTCATTTGCTTATGCTGTCCTAAAGAGATTCTTGCCAGAACAAACAGCAGAGTCCGTGAAGGGCATCTCGCTGTGTGCTGGTGGTAAAGGT GCAGTCTTTGATGTCGTAGCTGAAGACGTCGACACTTTCCTAACCGGGGCAGAAAATGCAGCTAATGTGACATTGGAAGTGGTGAAGACATTGCCTGCCC TCGAAGAGAAGGACCAGGCTAGGTCAAGATTCGGGGGAGGCGGTGGTGGTCGTGGATACGGTGGTGGCTACGGCGGCGGTAGTAGGTTTGGCGGCAGAGG AGGCGGAGGTGGTAGGGGCGGCAGAGGTGGCTATGGCGGCGGTGGCAGGGGTGGCTCCGGCGGGTATAAGAAGTGGTGA
AA sequence Show only first row Show all	>Lus10038898 pacid=23150366 polypeptide=Lus10038898 locus=Lus10038898.g ID=Lus10038898.BGIv1.0 annot-version=v1.0 MPSIALANDSMEVSNKKEKKMKKLALEAMETDNEPKSKKKEKKSKRKAAEIESGDDEVKSETSSELGEPENSKSEKKEKKAKKAKVDEVEEEEEVVVKAD DPNAVDNFRISEPLKQKLKSRGIEALFPIQAMTFTDILDGCDLVGRARTGQGKTLAFVLPILESLINGKAKSTRKTGYGRPPSVLVLLPTRELAVQVHED FKVYGESLGLTSCCLYGGSPYNPQESSLKRGVDIVVGTPGRIKDHIERGNINFSTLMFRVLDEADEMLRMGFVDDVELILGKVEDVTKVQTLLFSATLPS WVKNISSRFLKQAKKTIDLVGNEKMKASTNVRHIVLPCTAAAIPQLIPDVIRCYSSGGRSIVFTEKKETANTLSGLLPGARPLHGDIQQSQREVTLSGFK SGKFMTLVATNVAARGLDINGVQLIIQCEPPRDVEDYIHRSGRTGRAGKTGVAVMLYDPRRSNVSKIERESGVKFEHVSAPQAADIAQSIGVQAAESITK GSVAYHSVIPAFKAAAEEMLNASGMSPVDLLAKALAKACGYTDIKTRSLLGSLENHVTLFLDAGKPFYSHSFAYAVLKRFLPEQTAESVKGISLCAGGKG AVFDVVAEDVDTFLTGAENAANVTLEVVKTLPALEEKDQARSRFGGGGGGRGYGGGYGGGSRFGGRGGGGGRGGRGGYGGGGRGGSGGYKKW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G62190		PRH75	DEAD box RNA helicase (PRH75) ...		Lus10038898 [exp]	0	1
AT5G62190		PRH75	DEAD box RNA helicase (PRH75) ...		Lus10015020 [exp]	1.0	0.9534
AT4G29830		VIP3	vernalization independence 3, ...		Lus10021571 [exp]	10.1	0.8705
AT1G49600		ATRBP47A	RNA-binding protein 47A (.1)		Lus10012070 [exp]	11.1	0.8560
AT5G60790		ABCF1, ATGCN1	ARABIDOPSIS THALIANA GENERAL C...		Lus10038681 [exp]	13.2	0.8203
AT1G79220			Mitochondrial transcription te...		Lus10031184 [exp]	17.0	0.8527
AT4G34110		PABP2, PAB2, AT...	ARABIDOPSIS POLY\(A\) BINDING ...		Lus10002835 [exp]	17.9	0.8730
AT5G07900			Mitochondrial transcription te...		Lus10041122 [exp]	24.4	0.8508
AT1G33140		PGY2	PIGGYBACK2, Ribosomal protein ...		Lus10032962 [exp]	35.8	0.8452
AT3G56550			Pentatricopeptide repeat (PPR)...		Lus10041327 [exp]	38.0	0.7887
AT3G01820			P-loop containing nucleoside t...		Lus10035224 [exp]	39.0	0.7677

Compare expression of checked genes

Lus10038898 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.