Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51690 667 / 0 ACS12 1-amino-cyclopropane-1-carboxylate synthase 12 (.1) AT1G62960 557 / 0 ACS10 ACC synthase 10 (.1) AT4G37770 419 / 1e-142 ACS8 1-amino-cyclopropane-1-carboxylate synthase 8 (.1) AT3G49700 414 / 5e-141 AtACS9, ACS9, ETO3 ETHYLENE OVERPRODUCING 3, 1-aminocyclopropane-1-carboxylate synthase 9 (.1) AT5G65800 405 / 2e-137 CIN5, ETO2, ACS5, ATACS5 ETHYLENE OVERPRODUCER 2, CYTOKININ-INSENSITIVE 5, ACC synthase 5 (.1) AT4G26200 402 / 2e-136 ACS7, ATACS7 1-amino-cyclopropane-1-carboxylate synthase 7 (.1) AT2G22810 399 / 7e-135 ACC4, ACS4, ATACS4 1-AMINOCYCLOPROPANE-1-CARBOXYLIC ACID SYNTHASE POLYPEPTIDE, 1-aminocyclopropane-1-carboxylate synthase 4 (.1) AT4G08040 389 / 4e-131 ACS11 1-aminocyclopropane-1-carboxylate synthase 11 (.1) AT1G01480 380 / 4e-127 AT-ACC2, ACS2 1-amino-cyclopropane-1-carboxylate synthase 2 (.1.2) AT4G11280 379 / 9e-127 ATACS6, ACS6 1-aminocyclopropane-1-carboxylic acid (acc) synthase 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015023 [exp] 937 / 0 AT5G51690 704 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 12 (.1) Lus10006676 [exp] 586 / 0 AT1G62960 620 / 0.0 ACC synthase 10 (.1) Lus10007021 [exp] 581 / 0 AT1G62960 612 / 0.0 ACC synthase 10 (.1) Lus10007223 [exp] 405 / 2e-137 AT4G37770 747 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 8 (.1) Lus10008579 [exp] 404 / 4e-137 AT4G26200 664 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 7 (.1) Lus10039647 [exp] 404 / 1e-136 AT4G37770 739 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 8 (.1) Lus10032695 [exp] 402 / 2e-136 AT4G26200 659 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 7 (.1) Lus10011565 [exp] 400 / 4e-135 AT4G37770 740 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 8 (.1) Lus10007910 [exp] 390 / 4e-131 AT3G61510 659 / 0.0 ARABIDOPSIS THALIANA 1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 1, ACC synthase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G132100 [exp] 718 / 0 AT5G51690 676 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 12 (.1) Potri.003G117700 [exp] 625 / 0 AT1G62960 664 / 0.0 ACC synthase 10 (.1) Potri.018G067000 [exp] 430 / 2e-147 AT4G26200 676 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 7 (.1) Potri.006G149600 [exp] 427 / 4e-146 AT4G26200 651 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 7 (.1) Potri.014G012600 [exp] 411 / 1e-139 AT4G37770 755 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 8 (.1) Potri.007G007800 [exp] 409 / 4e-139 AT4G37770 749 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 8 (.1) Potri.002G113900 [exp] 409 / 4e-139 AT4G37770 682 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 8 (.1) Potri.002G163700 [exp] 398 / 2e-134 AT3G61510 684 / 0.0 ARABIDOPSIS THALIANA 1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 1, ACC synthase 1 (.1) Potri.001G099400 [exp] 394 / 6e-133 AT4G11280 656 / 0.0 1-aminocyclopropane-1-carboxylic acid (acc) synthase 6 (.1) Potri.003G132300 [exp] 386 / 1e-129 AT4G11280 659 / 0.0 1-aminocyclopropane-1-carboxylic acid (acc) synthase 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [flax] [poplar] PLP_aminotran PF00155 [flax] [poplar] Aminotran_1_2 Aminotransferase class I and II
Representative CDS sequence Show only first row Show all	>Lus10038899 pacid=23150504 polypeptide=Lus10038899 locus=Lus10038899.g ID=Lus10038899.BGIv1.0 annot-version=v1.0 ATGAGGCTCGTCGTACCTCTGCAAGGCGTCGTCCACGGAAGAGGAGGCCTAATCTTAGGCTCGCTAATCCCTTGCGCTCTGTTCTACTTCTTCCAGCTGT ACCTCAAGCGCCACCGCTCTCCTCCCACGGATCCTCCTCCTCCTACTTCCTCGTCGAATCCGACATCGCCGTCCGCTTCGTCTCCCAACCTCGTCGATCT CCCCAGGAGTGCCTCCCGCTCCAATCTGCTCAGCCGCGGGTCGTTTGGCTCCGTCCGGTCGTCGTCGCGAGGGATGGCGCTCGCGAAACCGAGCGAGTCC CCGTACTATATCGGGTTGGATAAGGTTTCCAAGGATCCGTATCATCGGAGAGATAATCCGGACGGGATCATGCAGCTTGGATTGTCCGAGAATCGACTGT GTTTGGATTTGATTGAGCAATGGATGAAGGACAATGTAAGGGATGCGCTGATGGGAGGTGGCAACGATGGTGAGTTGAGCATCAATGGAATAGCTTCATA CCAGCCGTTCGACGGATTATTGAAGCTGAAAGTGGCTATGGCCGATTTCATGTCTCAAGTGATGGGGAGAGAGCTTACGTTTGATCCGTCGAAAATGGTA TTGATGGCTGGTGCGACTCCAGCTGTTGAAATACTAACCTTCTGCTTGGCCGATCATGGAAATGCACTTCTCATTCCGACTCCATACTATCCTGGATTCG ACAAAGATATAAAGTCTCGAACAGGGGTAGAGCTAATCCCAGTTCACTGCCGGAGCACAGACAACTTCATGTTAACCGTCACTGCTCTCGATCAAGCTTA CAACCAAGCAAGGAAACGGGGCCTGAAAGTTCGTGGGATTCTAATTTCCAACCCTTCAAATCCTGTTGGAAATATTCTGTCTCGGGATACGCTGTGTGAT CTGTTGGATTTCGCACAGGAGAAGAACATCCACATAATATCCGATGAAATATTTGCTGGGTCACGTTATGGTACCGAGGAATTCGTGAGCATGGCAGAAA TTGTCGAAGCAGAAGAAGGTTACGATAAGAGCCGAGTTCATATCATATACGGGCTGTCTAAGGACCTTTCTCTTCCTGGATTCAGAGTCGGGGTTGTCTA TTCCTACAACGAAAACGTCTTTGCTGCTGCGAAACAGCTTACTAGGTTTTCTTCAATTTCTGCTCCAACTCAGAGGCTTTTGATCTCCATACTCTCGGAT AGAAAGTTCATCAACGAATATACCGAAACCAACAGAATGAAGATTCAGAGGATGCACGACCTGTTTGTCGAAGGTCTTAACCATTTAGGAATTAGGTGTG CAAAGAGCTGTGCAGGGTTATACTCCTGGGCTGATATGAGCTCGCTTATGTCCTTATATAGTGAAAAGGGAGAGCTTGAATTATGGGATAGGCTGCTGAA TATTGCTAAAGTCAATGTAACTCCCGGATCGGCCTGCCATTGCATCGAACCAGGTTGGTTCAGGTGCTGTTTTACTGCTTTAGCTGAAGAAGATCTTCAT GTTCTTATGGAGCGAATTAGAAAAGTCGCTGAAATTTCTAAATCTGAGCATTGA
AA sequence Show only first row Show all	>Lus10038899 pacid=23150504 polypeptide=Lus10038899 locus=Lus10038899.g ID=Lus10038899.BGIv1.0 annot-version=v1.0 MRLVVPLQGVVHGRGGLILGSLIPCALFYFFQLYLKRHRSPPTDPPPPTSSSNPTSPSASSPNLVDLPRSASRSNLLSRGSFGSVRSSSRGMALAKPSES PYYIGLDKVSKDPYHRRDNPDGIMQLGLSENRLCLDLIEQWMKDNVRDALMGGGNDGELSINGIASYQPFDGLLKLKVAMADFMSQVMGRELTFDPSKMV LMAGATPAVEILTFCLADHGNALLIPTPYYPGFDKDIKSRTGVELIPVHCRSTDNFMLTVTALDQAYNQARKRGLKVRGILISNPSNPVGNILSRDTLCD LLDFAQEKNIHIISDEIFAGSRYGTEEFVSMAEIVEAEEGYDKSRVHIIYGLSKDLSLPGFRVGVVYSYNENVFAAAKQLTRFSSISAPTQRLLISILSD RKFINEYTETNRMKIQRMHDLFVEGLNHLGIRCAKSCAGLYSWADMSSLMSLYSEKGELELWDRLLNIAKVNVTPGSACHCIEPGWFRCCFTALAEEDLH VLMERIRKVAEISKSEH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G51690		ACS12	1-amino-cyclopropane-1-carboxy...		Lus10038899 [exp]	0	1
AT5G51690		ACS12	1-amino-cyclopropane-1-carboxy...		Lus10015023 [exp]	1.0	0.9210
AT3G62010			unknown protein		Lus10009251 [exp]	2.4	0.8852
AT3G54660		ATGR2, EMB2360,...	glutathione reductase (.1)		Lus10018770 [exp]	2.4	0.8943
AT5G67570		EMB246, DG1, EM...	EMBRYO DEFECTIVE 246, embryo d...		Lus10012091 [exp]	8.1	0.8721
AT5G13950			unknown protein		Lus10035121 [exp]	8.7	0.8124
AT5G53550		ATYSL3, YSL3	YELLOW STRIPE like 3 (.1.2)		Lus10023240 [exp]	10.8	0.8332
AT2G24120		PDE319, SCA3	SCABRA 3, PIGMENT DEFECTIVE 31...		Lus10010771 [exp]	13.0	0.8726
AT5G19420			Regulator of chromosome conden...		Lus10039525 [exp]	17.9	0.8777
AT2G03050		SOLDAT10, EMB93	SINGLET OXYGEN-LINKED DEATH AC...		Lus10030451 [exp]	19.3	0.8476
AT1G30010			Intron maturase, type II famil...		Lus10028124 [exp]	23.6	0.8570

Compare expression of checked genes

Lus10038899 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.