Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51680 59 / 1e-09 hydroxyproline-rich glycoprotein family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015024 [exp] 420 / 1e-149 AT5G51680 92 / 4e-21 hydroxyproline-rich glycoprotein family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G132000 [exp] 97 / 2e-23 AT5G51680 79 / 2e-16 hydroxyproline-rich glycoprotein family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10038900 pacid=23150635 polypeptide=Lus10038900 locus=Lus10038900.g ID=Lus10038900.BGIv1.0 annot-version=v1.0 ATGGACTCAAACGAGGCGATCCGAGGTTCGAAGAGAAGAAGGAATATCAGGGAGCCACCATCAGTTCCATTCCTATGGGAAGAGAAGCCAGGAATAGCCA AGAAGAACTGGTGTAATAAGCCTGTCAAACCAGTAACTCAATGGTCGCCGCCATCAGTGCCGGCGGTGAAGCTCATTGCTTCGGTTCCTTTCGACTGGGA AGAGAAGCCTGGAACCCCTCTATCGCGATTCTCGAAGCCTGAAGACGGAAGCTTTCCTTCGCCAGGAAAGCTTCTTCCTTTACCGCCGGCTATGATGTGC GCCGAGGGTGGAGTTTCCGACTGGTATAAAAGGTCCCCACCACCGTCGTCTCTCTTGGCGAATTGCCTGATCTCGTCTGCTGCTATTTCTGCTGCTGTTC CGGTTGTAGAGTCCGAGATGATGGATAGGCAGTGGGAGAACGAGATCATACCACCTTTGTCGCCAGCTTACGAGAGCGACAGCAGCAGTACTAGTAGCTA CGAGACTGGAAGGTCGAGCCTCGTGGGGTCTTCGTTCTTGGAATGCCTGTTCCCTTTGTACAGACAAGCTTCGGCAGGTTCACTCGATGGCTCCTCGAGT TCGACTCAGAAACCAGAGCTCAATTTTCCGGAGGAGAGTGATCGTGGTGCAGCTATGATAACTGGGGCTCCGACGCTTGGAGACCTGATCATGATGAGCA GGAGGAGGAGCATCCAGAGGAAAGCTGCGAGAATGCGATTACATAATCCGTCAATGGAGCTCTTGGAGGGCAAGCCTTTCAGATGCAGCATATTCCCAAC TGGGATGAAAATGGTGGAAGGGCTGCAGAGGAAGATGCACCAAACAAGACTGGCGCTCCTGTAG
AA sequence Show only first row Show all	>Lus10038900 pacid=23150635 polypeptide=Lus10038900 locus=Lus10038900.g ID=Lus10038900.BGIv1.0 annot-version=v1.0 MDSNEAIRGSKRRRNIREPPSVPFLWEEKPGIAKKNWCNKPVKPVTQWSPPSVPAVKLIASVPFDWEEKPGTPLSRFSKPEDGSFPSPGKLLPLPPAMMC AEGGVSDWYKRSPPPSSLLANCLISSAAISAAVPVVESEMMDRQWENEIIPPLSPAYESDSSSTSSYETGRSSLVGSSFLECLFPLYRQASAGSLDGSSS STQKPELNFPEESDRGAAMITGAPTLGDLIMMSRRRSIQRKAARMRLHNPSMELLEGKPFRCSIFPTGMKMVEGLQRKMHQTRLALL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G51680			hydroxyproline-rich glycoprote...		Lus10038900 [exp]	0	1
AT4G30230			unknown protein		Lus10036511 [exp]	1.0	0.9330
AT5G51680			hydroxyproline-rich glycoprote...		Lus10015024 [exp]	3.5	0.9188
					Lus10011527 [exp]	7.6	0.8944
AT3G12250	bZIP	BZIP45, TGA6	TGACG motif-binding factor 6 (...		Lus10024140 [exp]	9.9	0.9278
AT1G44170		ALDH4, ALDH3H1	aldehyde dehydrogenase 4, alde...		Lus10042724 [exp]	10.6	0.9147
AT5G19410		ABCG23	ATP-binding cassette G23, ABC-...		Lus10017683 [exp]	13.7	0.8811
AT5G27210			Protein of unknown function, t...		Lus10018984 [exp]	15.0	0.8960
AT3G57620			glyoxal oxidase-related protei...		Lus10015949 [exp]	16.2	0.8429
AT1G79870			D-isomer specific 2-hydroxyaci...		Lus10011442 [exp]	17.5	0.8707
AT2G33740		CUTA	Nitrogen regulatory PII-like, ...		Lus10014898 [exp]	19.0	0.9104

Compare expression of checked genes

Lus10038900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.