Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25380 79 / 1e-18 AtSAP10, SAP10 Arabidopsis thaliana stress-associated protein 10, stress-associated protein 10 (.1) AT1G12440 77 / 1e-17 A20/AN1-like zinc finger family protein (.1.2) AT4G12040 76 / 7e-17 AtSAP7 stress-associated protein 7, A20/AN1-like zinc finger family protein (.1.2) AT3G52800 76 / 7e-17 A20/AN1-like zinc finger family protein (.1) AT4G22820 74 / 2e-16 A20/AN1-like zinc finger family protein (.1.2) AT2G36320 74 / 2e-16 A20/AN1-like zinc finger family protein (.1) AT3G12630 73 / 6e-16 SAP5 stress associated protein 5, A20/AN1-like zinc finger family protein (.1) AT2G27580 71 / 2e-15 A20/AN1-like zinc finger family protein (.1.2) AT4G14225 68 / 2e-14 A20/AN1-like zinc finger family protein (.1) AT1G51200 65 / 9e-13 A20/AN1-like zinc finger family protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015025 [exp] 370 / 3e-131 AT4G25380 77 / 1e-17 Arabidopsis thaliana stress-associated protein 10, stress-associated protein 10 (.1) Lus10030150 [exp] 86 / 6e-21 AT4G12040 119 / 8e-35 stress-associated protein 7, A20/AN1-like zinc finger family protein (.1.2) Lus10037702 [exp] 76 / 7e-17 AT3G12630 176 / 1e-56 stress associated protein 5, A20/AN1-like zinc finger family protein (.1) Lus10031833 [exp] 76 / 8e-17 AT1G51200 186 / 5e-61 A20/AN1-like zinc finger family protein (.1.2.3.4) Lus10007015 [exp] 76 / 1e-16 AT1G12440 207 / 3e-69 A20/AN1-like zinc finger family protein (.1.2) Lus10031262 [exp] 75 / 1e-16 AT1G51200 187 / 2e-61 A20/AN1-like zinc finger family protein (.1.2.3.4) Lus10008912 [exp] 75 / 2e-16 AT1G12440 202 / 4e-67 A20/AN1-like zinc finger family protein (.1.2) Lus10015697 [exp] 75 / 2e-16 AT3G12630 178 / 1e-57 stress associated protein 5, A20/AN1-like zinc finger family protein (.1) Lus10028903 [exp] 75 / 2e-16 AT1G12440 205 / 3e-68 A20/AN1-like zinc finger family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G131900 [exp] 83 / 8e-20 AT4G22820 123 / 2e-36 A20/AN1-like zinc finger family protein (.1.2) Potri.012G130000 [exp] 82 / 2e-19 AT4G22820 121 / 1e-35 A20/AN1-like zinc finger family protein (.1.2) Potri.012G130100 [exp] 78 / 6e-18 AT4G22820 114 / 7e-33 A20/AN1-like zinc finger family protein (.1.2) Potri.015G131500 [exp] 76 / 1e-17 AT4G22820 114 / 3e-33 A20/AN1-like zinc finger family protein (.1.2) Potri.001G018600 [exp] 77 / 2e-17 AT1G51200 203 / 2e-67 A20/AN1-like zinc finger family protein (.1.2.3.4) Potri.003G205500 [exp] 76 / 4e-17 AT1G51200 202 / 4e-67 A20/AN1-like zinc finger family protein (.1.2.3.4) Potri.004G184300 [exp] 76 / 7e-17 AT2G27580 156 / 4e-49 A20/AN1-like zinc finger family protein (.1.2) Potri.009G144100 [exp] 73 / 4e-16 AT2G27580 166 / 5e-53 A20/AN1-like zinc finger family protein (.1.2) Potri.006G056500 [exp] 73 / 1e-15 AT1G51200 167 / 2e-53 A20/AN1-like zinc finger family protein (.1.2.3.4) Potri.001G269400 [exp] 73 / 1e-15 AT3G12630 160 / 2e-50 stress associated protein 5, A20/AN1-like zinc finger family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01428 [flax] [poplar] zf-AN1 AN1-like Zinc finger
Representative CDS sequence Show only first row Show all	>Lus10038901 pacid=23150603 polypeptide=Lus10038901 locus=Lus10038901.g ID=Lus10038901.BGIv1.0 annot-version=v1.0 ATGGCTCCTTCACCTTGCGTCCACGGCTGCACGGCCAATTGCCCCCGCTGCCACTCTTACGGACACCCCATCTTCGGGAACTCAGATCTCGCCGCTGGCG GCAGCGATACGTCCACGTCGGTGTTTGGAAAAGTAGGATCCGTCGTGATTCAGTCGCCTGCGAAGAATCACGCGTTCGGCCAAGCTTGTGGCCCGGTTTT TCCCTCGAGCTCCTCCCCTTTCCGCCGCATCAAGTTCGGCCCCAAAGATGGCGAGGGGAAAGGACCGCTGAAGCCGATCGAGAAGCAGCCGTCGAAGAAG CGTCCGTTCTGCTTCTCTCCCGACGAGACGATTGACGCGACGGTTCCTCCGTCCACCAAACCGTTCGGTTCGTTCCGTTCCGTCTGTGTCACGGACGCCG ACGAGGCCAGGTTGAAGGCGAACCGCGAGTTCTTCGCTCCGGTATCCCGCAAACGTGGCTTCGATCCGACTGACATGACCTTCGGTAACGCCGCCGCCGC TGCGGCTAATGCGAGGGAGGAAGCGAAGAAGTGGTGCGGCAGTTGCAAGAAGCGCGTGGGGCTGTTAGGGTTCAAGTGCAGGTGTACGAAGTTCTTCTGT GGGAAGCATCGGTATCCTGAGGAGCATGGTTGTACGTTCGATCATGTGGCGTTCGGGAGGCGGATTATCGAGAAACAGAATCCTGTTCTCGAGACCGACA AGCTGGTGGACAGAATCTGA
AA sequence Show only first row Show all	>Lus10038901 pacid=23150603 polypeptide=Lus10038901 locus=Lus10038901.g ID=Lus10038901.BGIv1.0 annot-version=v1.0 MAPSPCVHGCTANCPRCHSYGHPIFGNSDLAAGGSDTSTSVFGKVGSVVIQSPAKNHAFGQACGPVFPSSSSPFRRIKFGPKDGEGKGPLKPIEKQPSKK RPFCFSPDETIDATVPPSTKPFGSFRSVCVTDADEARLKANREFFAPVSRKRGFDPTDMTFGNAAAAAANAREEAKKWCGSCKKRVGLLGFKCRCTKFFC GKHRYPEEHGCTFDHVAFGRRIIEKQNPVLETDKLVDRI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G25380		AtSAP10, SAP10	Arabidopsis thaliana stress-as...		Lus10038901 [exp]	0	1
AT4G14450		ATBET12	unknown protein		Lus10021208 [exp]	3.5	0.8444
AT2G38360		PRA1.B4	prenylated RAB acceptor 1.B4 (...		Lus10012224 [exp]	7.9	0.8305
AT5G17350			unknown protein		Lus10034636 [exp]	8.7	0.8354
AT5G65380			MATE efflux family protein (.1...		Lus10015903 [exp]	9.5	0.7986
AT1G60940		SNRK2-10, SNRK2...	SNF1-RELATED KINASE 2B, SUCROS...		Lus10015464 [exp]	18.5	0.7781
					Lus10033740 [exp]	19.6	0.7236
AT1G08250		AtADT6, ADT6	Arabidopsis thaliana arogenate...		Lus10019526 [exp]	21.1	0.8194
AT2G44710			RNA-binding (RRM/RBD/RNP motif...		Lus10012785 [exp]	21.8	0.7321
AT1G44350		ILL6	IAA-leucine resistant (ILR)-li...		Lus10025668 [exp]	21.9	0.7906
AT4G22240			Plastid-lipid associated prote...		Lus10014790 [exp]	24.6	0.8015

Compare expression of checked genes

Lus10038901 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.