Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51640 608 / 0 TBL17, YLS7 YELLOW-LEAF-SPECIFIC GENE 7, TRICHOME BIREFRINGENCE-LIKE 17, Plant protein of unknown function (DUF828) (.1) AT4G25360 598 / 0 TBL18 TRICHOME BIREFRINGENCE-LIKE 18 (.1.2) AT4G11090 244 / 2e-75 TBL23 TRICHOME BIREFRINGENCE-LIKE 23 (.1) AT1G01430 228 / 3e-69 TBL25 TRICHOME BIREFRINGENCE-LIKE 25 (.1) AT5G15900 226 / 6e-69 TBL19 TRICHOME BIREFRINGENCE-LIKE 19 (.1) AT4G23790 225 / 2e-68 TBL24 TRICHOME BIREFRINGENCE-LIKE 24 (.1) AT1G70230 225 / 2e-68 AXY4, TBL27 ALTERED XYLOGLUCAN 4, TRICHOME BIREFRINGENCE-LIKE 27 (.1) AT5G15890 224 / 6e-67 TBL21 TRICHOME BIREFRINGENCE-LIKE 21 (.1) AT3G28150 217 / 1e-65 AXY4L, TBL22 ALTERED XYLOGLUCAN 4-LIKE, TRICHOME BIREFRINGENCE-LIKE 22 (.1) AT4G01080 213 / 2e-63 TBL26 TRICHOME BIREFRINGENCE-LIKE 26 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015026 [exp] 954 / 0 AT5G51640 624 / 0.0 YELLOW-LEAF-SPECIFIC GENE 7, TRICHOME BIREFRINGENCE-LIKE 17, Plant protein of unknown function (DUF828) (.1) Lus10031117 [exp] 669 / 0 AT5G51640 608 / 0.0 YELLOW-LEAF-SPECIFIC GENE 7, TRICHOME BIREFRINGENCE-LIKE 17, Plant protein of unknown function (DUF828) (.1) Lus10031695 [exp] 665 / 0 AT5G51640 613 / 0.0 YELLOW-LEAF-SPECIFIC GENE 7, TRICHOME BIREFRINGENCE-LIKE 17, Plant protein of unknown function (DUF828) (.1) Lus10024167 [exp] 250 / 3e-78 AT5G15900 381 / 3e-130 TRICHOME BIREFRINGENCE-LIKE 19 (.1) Lus10029454 [exp] 232 / 6e-71 AT1G01430 488 / 2e-171 TRICHOME BIREFRINGENCE-LIKE 25 (.1) Lus10032367 [exp] 232 / 3e-70 AT4G11090 521 / 0.0 TRICHOME BIREFRINGENCE-LIKE 23 (.1) Lus10005952 [exp] 228 / 3e-70 AT1G01430 464 / 5e-163 TRICHOME BIREFRINGENCE-LIKE 25 (.1) Lus10003061 [exp] 228 / 3e-69 AT5G15900 488 / 5e-172 TRICHOME BIREFRINGENCE-LIKE 19 (.1) Lus10033950 [exp] 228 / 5e-69 AT4G11090 523 / 0.0 TRICHOME BIREFRINGENCE-LIKE 23 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G131600 [exp] 670 / 0 AT4G25360 671 / 0.0 TRICHOME BIREFRINGENCE-LIKE 18 (.1.2) Potri.012G129700 [exp] 655 / 0 AT4G25360 640 / 0.0 TRICHOME BIREFRINGENCE-LIKE 18 (.1.2) Potri.004G105500 [exp] 252 / 1e-78 AT5G15900 398 / 1e-136 TRICHOME BIREFRINGENCE-LIKE 19 (.1) Potri.017G110200 [exp] 246 / 3e-76 AT5G15900 419 / 2e-144 TRICHOME BIREFRINGENCE-LIKE 19 (.1) Potri.002G168400 [exp] 242 / 8e-75 AT1G01430 495 / 4e-174 TRICHOME BIREFRINGENCE-LIKE 25 (.1) Potri.001G093800 [exp] 242 / 1e-74 AT4G11090 516 / 0.0 TRICHOME BIREFRINGENCE-LIKE 23 (.1) Potri.003G137800 [exp] 239 / 2e-73 AT4G11090 500 / 4e-176 TRICHOME BIREFRINGENCE-LIKE 23 (.1) Potri.017G073700 [exp] 238 / 3e-73 AT3G28150 442 / 3e-154 ALTERED XYLOGLUCAN 4-LIKE, TRICHOME BIREFRINGENCE-LIKE 22 (.1) Potri.014G095800 [exp] 234 / 1e-71 AT1G01430 498 / 2e-175 TRICHOME BIREFRINGENCE-LIKE 25 (.1) Potri.011G144100 [exp] 229 / 4e-70 AT3G28150 415 / 9e-144 ALTERED XYLOGLUCAN 4-LIKE, TRICHOME BIREFRINGENCE-LIKE 22 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description
Representative CDS sequence Show only first row Show all	>Lus10038902 pacid=23150713 polypeptide=Lus10038902 locus=Lus10038902.g ID=Lus10038902.BGIv1.0 annot-version=v1.0 ATGGCTGGACTCCCTAGGTCTTTAGCTTACATTACTGCTTCAGTGGCTGGCCTTGCTATTTTTCTGGTTCTTGCTTCTTCGCTCTTGCTGTCGTATCCTA TCTCTTCTGCTGTTCAAGGCTACTTCTACAAGGTTGAATCGTCATCATTATCATCATCACAGGCAGTTGAACAGCTGCTGAATCGGACCGGTAGTTTTGT TAATTTTAATGCTAGTAGTGTTGGGAGATCGTCGGCCTTTGTTGCCAATTCGAGCCGTGTAGATATTAAGAATCCTGCTAGTGTAGATAAGGGTATCGAG GTTGATTCCGAGTCGAAGAGCGAGGAAGGTAATTCGAACATGGTAGCTCAAGAGGTGAAAGCTGGTTCAGATGATCCAGGGTGTGATCTGTTCAACGGAA CATGGTTCTACGATCCGCTCGGGCCAATGTACACGAACAACACTTGCCCGGTCATCACGCAGATGCAGAACTGCCAAGGCAACGGAAGACCTGACCACGA GTACGAGAATTGGCGAAGGAAGCCCACTCGATGCGAGCTTCCCCGGTTCGATGCAAAGAAGTTCCTCGAACTTATGAGAGGAAAGACCATAGCTTTCATT GGTGACTCCGTGGCTCGGAACCAGATGGAGTCACTCCTCTGCCTTCTTTGGCAGGCAACTCCGAAAAACCGAGGGAACAAGAGAATGCAGCGGCATTACT TCAAATCGACCGATACAACGGTCATTCGAATGTGGTCGTCGTGGCTCATTTATCAAACATCGAAACCTATCGGCTATGCTCCGGAGGGTGTCACGAAGGT TCACCTCGACGAACCAGACTATAACTTCATGGAATTCGTCCCGAATTTCGATGTTGTCGTGCTCTCATCGGGCCATTGGTTCGCCAAGCAGTCCGTCTAC GTGTTGAACAAGACCGAAATCGTGGGAGGACAGCTATGGTGGCCTGATAAGTCCCGTGAGATGAAGGTCAACAACATACAAGCATTCGAGATATCCGTCG AGACCATCGTGGCCTCGATGCTCACACATCCAAACTACACCGGGCTGACCATCCTCCGGTCCTATTCCCCCGACCACTACGAAGGCGGGGCATGGAACAC GGGCGGATCATGCACCGGGAAGACCAGGCCTCTTGATCCAGGCCACCTGGTGAAGAACGAGTTCACGAACGTAATGCACGAGAAGCAGATGTCAGGGTTC GAGAGGGGACTCAAAAAGGCAGTGGAAACGAATAAGAACAAGAAGTCGAAATTCGTGGTGATGGACATCACCGAAGTGTTTGGCTACCGACACGATGGCC ATCCTGGTCCGTACCGGAGCCTTGATCCGAATAAAAGGACACAATTTGGCCCCGACGGGAAGCCTCCTCCGCAAGATTGCTTGCATTGGTGCATGCCTGG CCCGATCGATACTTGGAACGAACTCGTGCTCGAGATTGTCAGAAGAGAATTCGAAAAGAAGTCGTCTTCCTCATCTTGA
AA sequence Show only first row Show all	>Lus10038902 pacid=23150713 polypeptide=Lus10038902 locus=Lus10038902.g ID=Lus10038902.BGIv1.0 annot-version=v1.0 MAGLPRSLAYITASVAGLAIFLVLASSLLLSYPISSAVQGYFYKVESSSLSSSQAVEQLLNRTGSFVNFNASSVGRSSAFVANSSRVDIKNPASVDKGIE VDSESKSEEGNSNMVAQEVKAGSDDPGCDLFNGTWFYDPLGPMYTNNTCPVITQMQNCQGNGRPDHEYENWRRKPTRCELPRFDAKKFLELMRGKTIAFI GDSVARNQMESLLCLLWQATPKNRGNKRMQRHYFKSTDTTVIRMWSSWLIYQTSKPIGYAPEGVTKVHLDEPDYNFMEFVPNFDVVVLSSGHWFAKQSVY VLNKTEIVGGQLWWPDKSREMKVNNIQAFEISVETIVASMLTHPNYTGLTILRSYSPDHYEGGAWNTGGSCTGKTRPLDPGHLVKNEFTNVMHEKQMSGF ERGLKKAVETNKNKKSKFVVMDITEVFGYRHDGHPGPYRSLDPNKRTQFGPDGKPPPQDCLHWCMPGPIDTWNELVLEIVRREFEKKSSSSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G51640		TBL17, YLS7	YELLOW-LEAF-SPECIFIC GENE 7, T...		Lus10038902 [exp]	0	1
AT5G51640		TBL17, YLS7	YELLOW-LEAF-SPECIFIC GENE 7, T...		Lus10015026 [exp]	1.0	0.9477
AT5G15740		RRT1	O-fucosyltransferase family pr...		Lus10007975 [exp]	5.1	0.8970
AT5G15630		IRX6, COBL4	IRREGULAR XYLEM 6, COBRA-LIKE4...		Lus10035131 [exp]	6.0	0.8942
AT4G26640	WRKY	ATWRKY20, WRKY2...	WRKY family transcription fact...		Lus10016595 [exp]	6.0	0.8916
AT5G47330			alpha/beta-Hydrolases superfam...		Lus10004757 [exp]	8.7	0.8083
AT5G15630		IRX6, COBL4	IRREGULAR XYLEM 6, COBRA-LIKE4...		Lus10031972 [exp]	10.1	0.8695
AT1G18520		TET11	tetraspanin11 (.1)		Lus10000869 [exp]	11.5	0.8495
AT4G10120		ATSPS4F	Sucrose-phosphate synthase fam...		Lus10041041 [exp]	12.8	0.7916
AT3G27470			Protein of unknown function (D...		Lus10032090 [exp]	13.4	0.8808
AT2G21340			MATE efflux family protein (.1...		Lus10018080 [exp]	14.1	0.8064

Compare expression of checked genes

Lus10038902 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.