Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25320 159 / 4e-45 AT-hook AT hook motif DNA-binding family protein (.1) AT5G62260 155 / 5e-44 AT-hook AT hook motif DNA-binding family protein (.1) AT4G12080 147 / 2e-41 AT-hook ATAHL1, AHL1 AT-hook motif nuclear-localized protein 1 (.1) AT4G00200 144 / 2e-40 AT-hook AT hook motif DNA-binding family protein (.1) AT5G51590 144 / 1e-39 AT-hook AT hook motif DNA-binding family protein (.1) AT4G22770 139 / 2e-38 AT-hook AT hook motif DNA-binding family protein (.1) AT2G33620 125 / 6e-33 AT-hook AT hook motif DNA-binding family protein (.1.2.3.4) AT1G63470 116 / 1e-29 AT-hook AT hook motif DNA-binding family protein (.1) AT4G17950 109 / 8e-27 AT-hook AT hook motif DNA-binding family protein (.1) AT1G63480 108 / 9e-27 AT-hook AT hook motif DNA-binding family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015027 [exp] 420 / 9e-148 AT4G25320 267 / 5e-87 AT hook motif DNA-binding family protein (.1) Lus10031696 [exp] 180 / 1e-53 AT4G25320 260 / 1e-83 AT hook motif DNA-binding family protein (.1) Lus10031118 [exp] 171 / 1e-51 AT4G25320 231 / 2e-74 AT hook motif DNA-binding family protein (.1) Lus10030269 [exp] 162 / 8e-47 AT4G12080 294 / 7e-98 AT-hook motif nuclear-localized protein 1 (.1) Lus10004022 [exp] 162 / 9e-47 AT4G12080 288 / 1e-95 AT-hook motif nuclear-localized protein 1 (.1) Lus10004318 [exp] 139 / 4e-38 AT4G12080 305 / 3e-102 AT-hook motif nuclear-localized protein 1 (.1) Lus10000315 [exp] 128 / 8e-34 AT2G33620 228 / 4e-72 AT hook motif DNA-binding family protein (.1.2.3.4) Lus10011067 [exp] 127 / 1e-33 AT2G33620 225 / 4e-71 AT hook motif DNA-binding family protein (.1.2.3.4) Lus10030381 [exp] 124 / 1e-32 AT2G45850 284 / 3e-94 AT hook motif DNA-binding family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G129500 [exp] 193 / 7e-59 AT5G62260 202 / 2e-61 AT hook motif DNA-binding family protein (.1) Potri.014G070000 [exp] 177 / 6e-53 AT4G12080 233 / 2e-74 AT-hook motif nuclear-localized protein 1 (.1) Potri.002G148600 [exp] 172 / 4e-51 AT4G12080 248 / 2e-80 AT-hook motif nuclear-localized protein 1 (.1) Potri.001G115800 [exp] 158 / 8e-46 AT4G12080 248 / 2e-80 AT-hook motif nuclear-localized protein 1 (.1) Potri.003G116500 [exp] 157 / 3e-45 AT4G12080 251 / 2e-81 AT-hook motif nuclear-localized protein 1 (.1) Potri.002G005000 [exp] 131 / 5e-35 AT2G33620 228 / 8e-72 AT hook motif DNA-binding family protein (.1.2.3.4) Potri.014G082100 [exp] 130 / 5e-35 AT2G45850 229 / 8e-73 AT hook motif DNA-binding family protein (.1.2) Potri.001G143500 [exp] 130 / 1e-34 AT4G17950 243 / 9e-77 AT hook motif DNA-binding family protein (.1) Potri.003G090900 [exp] 129 / 3e-34 AT4G17950 216 / 3e-66 AT hook motif DNA-binding family protein (.1) Potri.005G256500 [exp] 128 / 1e-33 AT2G33620 196 / 2e-59 AT hook motif DNA-binding family protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0615 [flax] [poplar] ALDC PF03479 [flax] [poplar] PCC Plants and Prokaryotes Conserved (PCC) domain
Representative CDS sequence Show only first row Show all	>Lus10038903 pacid=23150395 polypeptide=Lus10038903 locus=Lus10038903.g ID=Lus10038903.BGIv1.0 annot-version=v1.0 ATGGAGGCACCACAAGGAATCGTTTCTTCAGGTGTAACTGTTGACGAAGCTCCGGAGAGCTACCGATTAGCTCCTCGAGCTGAAAACCCGAATAACCCGA ATCCGGTTACGAATTCGATCCAGTTCGGGAATCAGCCTGCGATGTCAGCTCCGCCGGATGGGAAGAAGAAAAGAGGGAGGCCGAGGAAGTACGGACCTGA CGGGAGTTTGTCGCCGATGCCGATATCGGCGTCGATTCCGCTGACATCCGGAGGAGGAGATTGCTCGTTGAAAAGAGGAAGAGGCAGGGGAAGAGCAAAG GGTTATTCCGACTCGGTGAAGAAGCTTCAGAGAATCGAATACCATAGCCCAGGAGGAGTTGCTTACTCTTTCGGAGCGAATTTCACTCCACATGTTCTTG CAGTGAATGCTGGCGAGGATGTTACAATGAAGGTCATGTCGTTTTCGCGAGAGAGTGATCGTGCCATATGCATTCTTTCTGCTAACGGCACGATCTCGAA TGTCACACTTCGCCAGCCTACTTCATCCGGCGGTACATTGACTTACGAGGGCCGGTTCGAGATATTATCATTATCCGGGTCGTTCATACTTACAGACACT GGAGGAACCAAGAGCAGAACAGGCGGAATGAGCGTGTCGTTGGCAGGTCCAGACGGTCGCGTAGTTGGCGGAGGGCTCGCTGGTCTCTTGGTTGCTGCCG GTCCGGTACGGGTAGTCGTTGGCAGTTTTGTACCGGGTGGTCAGCAGATGGAGCAGCAGAAGAAGCGTCGAATCGAAACACCGCCAGCTCGAGTCACGGT CCTCACCCCGGAAGAGCTGAAAGCAGCATATGCTGCGGCCAAGCCGCCAGCCATGAACGACATTCGCCCGCCTTCGTTCAACCATGTCCACATGTTTATG CACCCGTCTTCTGAGAACAAGAGCAGCGCCGACGAAGATGCAGACTCGAGAGGTAACGAAGAATTGAAGCCGCCCTGTGAGGTTACTTGCTGA
AA sequence Show only first row Show all	>Lus10038903 pacid=23150395 polypeptide=Lus10038903 locus=Lus10038903.g ID=Lus10038903.BGIv1.0 annot-version=v1.0 MEAPQGIVSSGVTVDEAPESYRLAPRAENPNNPNPVTNSIQFGNQPAMSAPPDGKKKRGRPRKYGPDGSLSPMPISASIPLTSGGGDCSLKRGRGRGRAK GYSDSVKKLQRIEYHSPGGVAYSFGANFTPHVLAVNAGEDVTMKVMSFSRESDRAICILSANGTISNVTLRQPTSSGGTLTYEGRFEILSLSGSFILTDT GGTKSRTGGMSVSLAGPDGRVVGGGLAGLLVAAGPVRVVVGSFVPGGQQMEQQKKRRIETPPARVTVLTPEELKAAYAAAKPPAMNDIRPPSFNHVHMFM HPSSENKSSADEDADSRGNEELKPPCEVTC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G25320	AT-hook		AT hook motif DNA-binding fami...		Lus10038903 [exp]	0	1
AT3G63500			Protein of unknown function (D...		Lus10019718 [exp]	9.2	0.8774
AT2G18250		ATCOAD	4-phosphopantetheine adenylylt...		Lus10014296 [exp]	9.3	0.8789
AT3G19910			RING/U-box superfamily protein...		Lus10017385 [exp]	19.1	0.8509
AT2G43590			Chitinase family protein (.1)		Lus10024368 [exp]	24.7	0.8337
AT2G18250		ATCOAD	4-phosphopantetheine adenylylt...		Lus10026004 [exp]	28.0	0.8590
AT4G16330			2-oxoglutarate (2OG) and Fe(II...		Lus10037292 [exp]	28.8	0.8530
AT5G03700			D-mannose binding lectin prote...		Lus10023868 [exp]	29.4	0.8662
AT1G03280			Transcription factor TFIIE, al...		Lus10011554 [exp]	30.6	0.8476
AT2G29940		ABCG31, PDR3, A...	ATP-binding cassette G31, plei...		Lus10009398 [exp]	36.6	0.8464
AT5G60550		ATSNAK1, GRIK2	geminivirus rep interacting ki...		Lus10041298 [exp]	39.1	0.8423

Compare expression of checked genes

Lus10038903 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.