Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36530 792 / 0 ENO2, LOS2 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 2, ENOLASE 2, Enolase (.1) AT1G74030 592 / 0 ENO1 enolase 1 (.1) AT2G29560 479 / 3e-167 ENOC cytosolic enolase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015028 [exp] 895 / 0 AT2G36530 802 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 2, ENOLASE 2, Enolase (.1) Lus10002844 [exp] 786 / 0 AT2G36530 800 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 2, ENOLASE 2, Enolase (.1) Lus10003374 [exp] 786 / 0 AT2G36530 799 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 2, ENOLASE 2, Enolase (.1) Lus10035579 [exp] 752 / 0 AT2G36530 775 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 2, ENOLASE 2, Enolase (.1) Lus10008647 [exp] 672 / 0 AT2G36530 687 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 2, ENOLASE 2, Enolase (.1) Lus10038963 [exp] 600 / 0 AT1G74030 808 / 0.0 enolase 1 (.1) Lus10027255 [exp] 600 / 0 AT1G74030 799 / 0.0 enolase 1 (.1) Lus10040711 [exp] 469 / 5e-163 AT2G29560 789 / 0.0 cytosolic enolase (.1) Lus10016447 [exp] 426 / 2e-145 AT2G29560 713 / 0.0 cytosolic enolase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G131100 [exp] 836 / 0 AT2G36530 811 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 2, ENOLASE 2, Enolase (.1) Potri.006G116800 [exp] 796 / 0 AT2G36530 814 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 2, ENOLASE 2, Enolase (.1) Potri.012G057500 [exp] 582 / 0 AT1G74030 810 / 0.0 enolase 1 (.1) Potri.009G040700 [exp] 499 / 3e-175 AT2G29560 809 / 0.0 cytosolic enolase (.1) Potri.012G129300 [exp] 270 / 2e-89 AT2G36530 260 / 1e-85 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 2, ENOLASE 2, Enolase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0227 [flax] [poplar] Enolase_N PF03952 [flax] [poplar] Enolase_N Enolase, N-terminal domain CL0256 [flax] [poplar] Enolase_TIM PF00113 [flax] [poplar] Enolase_C Enolase, C-terminal TIM barrel domain
Representative CDS sequence Show only first row Show all	>Lus10038904 pacid=23150669 polypeptide=Lus10038904 locus=Lus10038904.g ID=Lus10038904.BGIv1.0 annot-version=v1.0 ATGGCGACGATCAAGGTTATCAAAGCTAGGCAGATCTTCGACAGCCGTGGAAATCCTACTGTTGAGGTTGATGTAACTCTTACCGACGGGACATTTGCCA GGGCCGCCGTGCCGAGCGGAGCTTCAACTGGTGTGTATGAGGCTCTGGAGTTGAGGGATGGAGGATCGGATTACCTTGGGAAGGGTGTGCTTAAGGCTGT GGATAATGTGAACTCCATCATTGCACCTGCTTTGATTGGCAAGGACACAACCAAACAAACTGAACTCGATAACTTCATGGTGCAACAGCTTGATGGAACC TCCAATGAGTGGGGTTGGTGCAAGCAGAAGCTTGGAGCGAATGCTATTTTGGCTGTTTCGCTTGCTATCTGTAAAGCTGGTGCTATTGTCAACAAAATCC CTCTCTATCAGCACATTGCAAATCTTGCTGGCAATAAGAACTTGGTCTTGCCAGTTCCTGCATTCAATGTCATAAATGGAGGTTCCCATGCTGGCAACAA GCTGGCAATGCAGGAATTCATGATTCTCCCAACTGGGGCTGAGTCGTTCAAGGAAGCGATGAAGATGGGAGTTGAAGTCTACCATCACTTGAAGGGTGTG ATCAAGAAGAAGTATGGTCAGGATGCCACCAATGTTGGTGATGAAGGTGGATTTGCTCCTAATATTCAGGAAAACAAAGAGGGACTTGAGCTCCTGAAAA CCGCCATAGCCAAAGCTGGTTATACTGGCAAGGTTGTGATTGGTATGGACGGTGGTGGTTCTGAGTTCTATGACGGCAAAGACAAAAGCTACGACCTGAA TTTCAAGGAAGAGAACAATGATGGATCCCAGAAGATCTCAGGAGACAGTCTGAAGAACGTTTACAAGTCATTTGTGTCTGATTATCCAATTGTATCCATC GAAGACCCCTTCGATCAGGATGACTGGGAGCACTACGCTAAGTTAACTTCTGAGATCGGTGGGAACGTGCAGATCGTTGGTGACGATCTCCTTGTCACAA ACCCCACGCGTGTCTCCAAAGCTATCAATGAAAAGAGTTGCAATGCCCTTCTGCTCAAGGTGAACCAAATCGGTTCAGTAACCGAAAGTATCGAAGCTGT GAAGATGTCGAAACGCGCTGGCTGGGGTGTCATGGCAAGCCACAGAAGTGGAGAAACTGAGGACACTTTCATCGCTGACCTTTCAGTCGGACTCTCTACT GGACAGATCAAAACTGGAGCTCCTTGCAGGTCCGAAAGGCTTGCTAAATACAATCAGCTCCTGCGGATTGAGGAAGAGCTCGGATCCGCTGCAGTTTACG CTGGATTGAAGTTCCGAACACCTGTCGAGCCATACTGA
AA sequence Show only first row Show all	>Lus10038904 pacid=23150669 polypeptide=Lus10038904 locus=Lus10038904.g ID=Lus10038904.BGIv1.0 annot-version=v1.0 MATIKVIKARQIFDSRGNPTVEVDVTLTDGTFARAAVPSGASTGVYEALELRDGGSDYLGKGVLKAVDNVNSIIAPALIGKDTTKQTELDNFMVQQLDGT SNEWGWCKQKLGANAILAVSLAICKAGAIVNKIPLYQHIANLAGNKNLVLPVPAFNVINGGSHAGNKLAMQEFMILPTGAESFKEAMKMGVEVYHHLKGV IKKKYGQDATNVGDEGGFAPNIQENKEGLELLKTAIAKAGYTGKVVIGMDGGGSEFYDGKDKSYDLNFKEENNDGSQKISGDSLKNVYKSFVSDYPIVSI EDPFDQDDWEHYAKLTSEIGGNVQIVGDDLLVTNPTRVSKAINEKSCNALLLKVNQIGSVTESIEAVKMSKRAGWGVMASHRSGETEDTFIADLSVGLST GQIKTGAPCRSERLAKYNQLLRIEEELGSAAVYAGLKFRTPVEPY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G36530		ENO2, LOS2	LOW EXPRESSION OF OSMOTICALLY ...		Lus10038904 [exp]	0	1
AT3G10920		MSD1, MEE33, AT...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10030534 [exp]	1.7	0.9877
AT5G11420			Protein of unknown function, D...		Lus10019724 [exp]	2.0	0.9873
AT3G08030			Protein of unknown function, D...		Lus10019723 [exp]	2.4	0.9842
AT5G25940			early nodulin-related (.1)		Lus10030052 [exp]	4.0	0.9841
AT3G17860	ZIM	TIFY6B, JAI3, J...	JASMONATE-INSENSITIVE 3, jasmo...		Lus10031333 [exp]	5.5	0.9755
					Lus10018421 [exp]	5.5	0.9839
AT3G48660			Protein of unknown function (D...		Lus10003120 [exp]	5.9	0.9810
AT2G18670			RING/U-box superfamily protein...		Lus10019979 [exp]	6.3	0.9802
AT2G36530		ENO2, LOS2	LOW EXPRESSION OF OSMOTICALLY ...		Lus10015028 [exp]	6.6	0.9800
AT3G59710			NAD(P)-binding Rossmann-fold s...		Lus10034835 [exp]	6.9	0.9776

Compare expression of checked genes

Lus10038904 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.