Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25340 297 / 2e-96 ATFKBP53 FK506 BINDING PROTEIN 53 (.1.2) AT5G05420 156 / 3e-46 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT3G12340 139 / 3e-36 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT5G45680 87 / 8e-20 ATFKBP13 FK506 BINDING PROTEIN 13, FK506-binding protein 13 (.1) AT5G48580 86 / 1e-19 FKBP15-2 FK506- and rapamycin-binding protein 15 kD-2 (.1) AT3G25220 82 / 2e-18 FKBP15-1 FK506-binding protein 15 kD-1 (.1) AT5G48570 84 / 3e-17 ROF2, ATFKBP65 FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1) AT3G25230 79 / 1e-15 ROF1, ATFKBP62 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) AT3G10060 74 / 4e-15 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT3G55520 71 / 4e-14 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015029 [exp] 631 / 0 AT4G25340 331 / 8e-110 FK506 BINDING PROTEIN 53 (.1.2) Lus10031121 [exp] 236 / 1e-72 AT4G25340 335 / 3e-110 FK506 BINDING PROTEIN 53 (.1.2) Lus10031700 [exp] 234 / 5e-71 AT4G25340 324 / 3e-105 FK506 BINDING PROTEIN 53 (.1.2) Lus10006949 [exp] 92 / 2e-21 AT5G45680 244 / 2e-82 FK506 BINDING PROTEIN 13, FK506-binding protein 13 (.1) Lus10002339 [exp] 86 / 8e-20 AT3G25220 227 / 1e-77 FK506-binding protein 15 kD-1 (.1) Lus10024735 [exp] 86 / 2e-19 AT5G45680 194 / 1e-63 FK506 BINDING PROTEIN 13, FK506-binding protein 13 (.1) Lus10025889 [exp] 84 / 3e-19 AT5G48580 196 / 1e-65 FK506- and rapamycin-binding protein 15 kD-2 (.1) Lus10003170 [exp] 83 / 1e-18 AT3G25220 226 / 4e-77 FK506-binding protein 15 kD-1 (.1) Lus10038215 [exp] 86 / 9e-18 AT3G25210 368 / 4e-125 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G129200 [exp] 401 / 1e-136 AT4G25340 344 / 1e-113 FK506 BINDING PROTEIN 53 (.1.2) Potri.015G130900 [exp] 243 / 3e-75 AT4G25340 204 / 1e-59 FK506 BINDING PROTEIN 53 (.1.2) Potri.007G000500 [exp] 107 / 6e-25 AT3G12340 149 / 1e-38 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.001G075500 [exp] 89 / 4e-20 AT5G45680 253 / 7e-86 FK506 BINDING PROTEIN 13, FK506-binding protein 13 (.1) Potri.002G248200 [exp] 84 / 5e-19 AT5G48580 228 / 1e-77 FK506- and rapamycin-binding protein 15 kD-2 (.1) Potri.014G149400 [exp] 85 / 1e-17 AT5G48570 741 / 0.0 FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.010G201600 [exp] 77 / 2e-16 AT3G55520 219 / 2e-73 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.016G096600 [exp] 78 / 3e-16 AT3G10060 272 / 6e-93 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.002G248300 [exp] 80 / 6e-16 AT3G25230 857 / 0.0 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) Potri.006G033400 [exp] 79 / 1e-15 AT5G48570 596 / 0.0 FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0487 [flax] [poplar] FKBP PF00254 [flax] [poplar] FKBP_C FKBP-type peptidyl-prolyl cis-trans isomerase
Representative CDS sequence Show only first row Show all	>Lus10038905 pacid=23150583 polypeptide=Lus10038905 locus=Lus10038905.g ID=Lus10038905.BGIv1.0 annot-version=v1.0 ATGACGAATACAGGGGTCTCCCCGGCTTCGGTCCAGGGGGTTGAAGTGAAGCCTGATAAACCTCATCCGTATCACTCTGACAATGCCCAGGGAACGCTTT ACGTTACCCAGGCAACTCTTGGACTCGGATCGTCCAAGGAGAGGAGCATACTGCAGTGTTCCAGAGGACACAACAGCCCGATTTTCCTGTGTTCTTTGCT GCCCGGTAAATCGGAATCTTGCTCTTTACATCTCGAATTTAAGGATGAGCTTGTAGCGTTCTCGGTGGTGGGAAAGCGTAGCATCCACCTTTCCGGTTAT TTCGTGTCCGAGGAAGGAGATGACCTTGGCAACGAAGATTCCAGTTCCGGTGAGGATATTGACGGTACAGAATCGGATGAATCCAGAAAATTCGATTATG ATGATGATGATGACTCGGAGGATGATCTGGACATGTTCCTGTCTTTGGCAGCTCCGAAGAGTGGAGTTCTTAATCGAAAGAAGCAAATGGTCGTGCTGGA AAGCGAAGATGAAGATGGTTTTCCAGTTTCTCAAGATCCTCAAACAGATGGACGAGATGATAAGAGCGAAGAATCGAAGACGAAGAAGCTAAAAGTAAAG GCTACTGAACTGGATAGCCAACTGGAAAAGAAGAAGAAGAAGAAGAAGAAAGGTAAGAAGGAAGCTGTAGCTGATATGGATGAGGATCATCAGAAAGAAC TCACTGGAGACGAAACCGAGAAACCTGCAGATGCTACTCCAGAATCTCCTGCGATCAATGAAAGTGAACGCAGGGAGACTGATGCAGATGAACCCGGCAA GATGAAGAACAAAAAGAAAAGGAAGAAGAATAAGAAGGCTAATGCTGATCAAGAGGGCGCAATTGCAACTGTTCCGGACAAGGGAAACGAGGCAAAATCG TCTTTGGTTTCGAACGAGAAGCAATCTGCTTCGAAAGCAAGAACCTTTTCGAACGGACTGGTGATCGAGGAGCTAGCCATGGGTAAACCAGATGGCAAAA GAGCTTCCCCTGGAAATCAGGTTAGCGTGAAATACATTGGGAAGCTACAAAAGAACGGCGAGACTTTCGACTCGAACATTGGGAAGGCTCCGTTCAACTT CCGGCTAGGCGTGGGGCAAGTCATTAAAGGATGGGACGTTGGAGTTAACGGGATGAGACTTGGGGACAAGAGAAGAATCACCATTCCTCCAGCAATGGGT TACGGGGAACGAGGTGTCGGCAGCAAGATCCCTCCGGATTCGTGGCTGGTTTTCGATGTAGAGTTGGTGAATGTTGGGTGA
AA sequence Show only first row Show all	>Lus10038905 pacid=23150583 polypeptide=Lus10038905 locus=Lus10038905.g ID=Lus10038905.BGIv1.0 annot-version=v1.0 MTNTGVSPASVQGVEVKPDKPHPYHSDNAQGTLYVTQATLGLGSSKERSILQCSRGHNSPIFLCSLLPGKSESCSLHLEFKDELVAFSVVGKRSIHLSGY FVSEEGDDLGNEDSSSGEDIDGTESDESRKFDYDDDDDSEDDLDMFLSLAAPKSGVLNRKKQMVVLESEDEDGFPVSQDPQTDGRDDKSEESKTKKLKVK ATELDSQLEKKKKKKKKGKKEAVADMDEDHQKELTGDETEKPADATPESPAINESERRETDADEPGKMKNKKKRKKNKKANADQEGAIATVPDKGNEAKS SLVSNEKQSASKARTFSNGLVIEELAMGKPDGKRASPGNQVSVKYIGKLQKNGETFDSNIGKAPFNFRLGVGQVIKGWDVGVNGMRLGDKRRITIPPAMG YGERGVGSKIPPDSWLVFDVELVNVG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G25340		ATFKBP53	FK506 BINDING PROTEIN 53 (.1.2...		Lus10038905 [exp]	0	1
AT1G18800		NRP2	NAP1-related protein 2 (.1)		Lus10023599 [exp]	8.8	0.7561
AT3G62870			Ribosomal protein L7Ae/L30e/S1...		Lus10009322 [exp]	9.2	0.7698
AT1G26910		RPL10B	ribosomal protein L10 B, Ribos...		Lus10031568 [exp]	15.7	0.7463
AT3G58660			Ribosomal protein L1p/L10e fam...		Lus10005380 [exp]	19.0	0.7390
AT5G67500		VDAC2, ATVDAC2	ARABIDOPSIS THALIANA VOLTAGE D...		Lus10018683 [exp]	21.2	0.7439
AT2G20490		NOP10, EDA27	EMBRYO SAC DEVELOPMENT ARREST ...		Lus10022910 [exp]	22.7	0.7662
AT1G18800		NRP2	NAP1-related protein 2 (.1)		Lus10024229 [exp]	29.7	0.6911
AT4G13850		ATGRP2, GR-RBP2	glycine rich protein 2, glycin...		Lus10043158 [exp]	35.4	0.7258
AT4G25740			RNA binding Plectin/S10 domain...		Lus10039282 [exp]	37.3	0.7319
AT3G58660			Ribosomal protein L1p/L10e fam...		Lus10024134 [exp]	42.2	0.6815

Compare expression of checked genes

Lus10038905 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.