Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G15570 914 / 0 MAA3 MAGATAMA 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G19120 262 / 5e-74 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G30100 259 / 9e-73 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G16800 252 / 5e-70 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G47010 179 / 2e-46 ATUPF1, UPF1, LBA1 LOW-LEVEL BETA-AMYLASE 1, RNA helicase, putative (.1) AT5G37030 164 / 2e-42 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G65810 166 / 5e-42 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT2G03270 157 / 6e-40 DNA-binding protein, putative (.1) AT4G05540 152 / 3e-38 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G37140 149 / 2e-37 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015030 [exp] 1430 / 0 AT4G15570 972 / 0.0 MAGATAMA 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10003960 [exp] 1217 / 0 AT4G15570 938 / 0.0 MAGATAMA 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10033462 [exp] 256 / 9e-72 AT4G30100 1589 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10035717 [exp] 238 / 5e-65 AT1G16800 1196 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10037303 [exp] 232 / 4e-63 AT1G16800 1190 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10003024 [exp] 179 / 4e-46 AT5G47010 2045 / 0.0 LOW-LEVEL BETA-AMYLASE 1, RNA helicase, putative (.1) Lus10011054 [exp] 177 / 1e-45 AT5G47010 1977 / 0.0 LOW-LEVEL BETA-AMYLASE 1, RNA helicase, putative (.1) Lus10026309 [exp] 165 / 2e-42 AT2G03270 1085 / 0.0 DNA-binding protein, putative (.1) Lus10035776 [exp] 165 / 2e-41 AT1G65810 633 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G056700 [exp] 1069 / 0 AT4G15570 1058 / 0.0 MAGATAMA 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.005G168300 [exp] 258 / 4e-72 AT4G30100 1620 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.002G093500 [exp] 255 / 4e-71 AT4G30100 1637 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.010G253700 [exp] 238 / 2e-65 AT1G16800 1405 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.003G086400 [exp] 174 / 9e-45 AT5G47010 2042 / 0.0 LOW-LEVEL BETA-AMYLASE 1, RNA helicase, putative (.1) Potri.001G148100 [exp] 174 / 1e-44 AT5G47010 2008 / 0.0 LOW-LEVEL BETA-AMYLASE 1, RNA helicase, putative (.1) Potri.008G143450 [exp] 170 / 4e-43 AT1G65810 694 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.008G142960 [exp] 170 / 5e-43 AT1G65810 683 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.008G143000 [exp] 169 / 6e-43 AT1G65810 680 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.004G077500 [exp] 162 / 1e-40 AT1G65810 827 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10038906 pacid=23150657 polypeptide=Lus10038906 locus=Lus10038906.g ID=Lus10038906.BGIv1.0 annot-version=v1.0 ATGACGGTGGTGAACAAGGAGAAGCTTCAGGAGGACGTCTCCTTCAAACGATTCTGCAAAATCGTCCTGGGTTGGGACCATTATCGCCTTCTCGGCGAAG CTGATAAGAAGAAGAAGAAGAAGGAGGAGGACAAGAGTGACAATGATTTAAAAGAAGTTAAGAATACTTACAAAGATGTCGATGATTACCTCTCCCCCTT CGAGCCCCTCTTGTTCGAAGAAGTGAAAGCCAATATTACTCAGAATAAAGATGATGAAAAAGTGACGAGGTGGGAAATGAGGTTGGTTACCGAGTGCAAT GAAGTCGAAGGGTTTTTCCAGGTTGCCATTACATATAATGGGGATGCTGATGAGAACAGAATCTCCCAAAATGATCTTCTCCTTCTTCAAAAGGAGACGA CCAAAACGACAGCATACGCTTATGCTTTGGTTGAGCATACACAAAATAATTGCCTTAGGCTTAGGATGTGTTTGGCTGGAGAAATCAAGAATACACGCTT GGATGTTGCTGAATCCAGTCCGAGGCTGTTAAACATGCAATCTCATATCACTGCTCCTTTGAACCCAGAACAGAAGCCCTTGTTCAGCTTAAAGATATGC AGTTTGTCAACGATTTCACGTGAATATATAGCTTTGCGGTCAATCGGGTCCCTTCCTTTCAAAGATTTAATACTAAAAGCCGCCGACAGACCTGATTCAG AAGACCAGGGATGGAAAGTTTCTGAAGCTCTTCGTGGACATTTTGAAGAAACCCTTAACCTATCACAGTTAGACGCTGTAAATGCTGGTCTATCACATAA ACGCTTTGTCCTGATACAGGGTCCTCCAGGAACAGGAAAAACACAAACGATTCTTGCACTACTCAGTGCTATTCTTCATGCCACTCCGGCTCGGGTGCAC TTGAAGGCTGGCTCACGTGAAACAAAATGTGGACCACAATTTTCAGTTCAAGACAAGTACAACCATTGGGCTCGAGCATCTCCATGGTTGACTGGTATCG ATCCCAGAGATGAGATTATGCCGAAAGGTGGCGATGATGGATTCTTTCCTACTACTGGAAGTGAGCTGAAACCAGAAATAGTTGCATCAAGTCGAAGATA TCGTCTAAGAGTACTTGTATGCGCTCCATCGAATTCTGCACTTGATGAGATAGTGTTGCGCCTTCTCAGAAATGGTGTTCGTGATGAAACTGTCAGTACA TATAACCCCAAAATTGTGCGCATCGGTCTTAAAGCACATCACTCAGTTCAGTCAGTCTGCATGGATTACCTTGTGAGACAAAAACAAAATGAGTCGAACA AACAGAGGCAGGGAGCCGCTGGAGGGGACACAGATAATATCGGCTCTTCAATTCTTGACGAGGCTGATATTGTTTTCTCCACTCTCAGCTTCAGTGGCTC GGCACTTTTCAGTAAACTGAATCATAGCTTTGATGTTGTAATCATTGATGAAGCTGCCCAAGCTGTAGAACCTGCCACTCTTGTTCCTTTATCCAATGGC TGCAAACAAGTGTTTCTGGTTGGTGATCCAGTTCAATTACCAGCCACTGTGATTTCTTCTACTGCCAGTAAATTCGGTTATTGTACAAGTTTGTTTGAGA GGTTTCAGAGCGCCGGATATCCAGTAAATATGCTGAAGATGCAGTACCGTATGCATCCAGAGATTAGAACCTTCCCTTCTAGCGAATTCTACAGCGAGGC TCTGGAGGATGCAGCGGATATGGAGCAGAAGACGAGACGGGACTGGCATAAGTACCGCTGCTTTAGCCCGTTTTGTTTCTTCGATCTGCACGAAAGCCAA GAGTCGCAGTCTTCAGGAAGCGGGTCGTATGAAAACACTGATGAGGCGGAATTCGTTCTTCTCCTATACCGTAAGCTGGTCTCTATGCATCCAGAACTCG GGCTGAGTTCGCAGTTCGCCATGATATCCCCGTATAGATCCCAAGTGAAGCTGTTGCAAGATCGATTTAAGGAAAATTTCGGCCAGGACTCGAGAGAGTT CGCCGATATTCAGACAGTTGATGGTTTCCAGGGTCGAGAGAAGGATGTTGCAATCTTCTCGTGTGTGAGGGCAAGCGAAAACAAAGGTATCGGGTTCGTA TCCGATTTTCGGAGGATGAACGTCGGTATCACCCGCGCAAAGTCCACTGTTCTGGTTGTAGGGTCTGCTGCAACTCTGAGGCGAGATGAGCACTGGACGA ACCTGATCGAAAGTGCAGAGAAGAGGAACGTTCTTTTCAAGGTGTCTAAGCCATATACTTCGTTCTTGAGCGATTCAAGTATGGAAGCCATGACCGTTAA GAAGGAGGAGGGTGTGGAGGATGAAATTGAGGAAGAACATGACTTGGACTTTGGTGGTAATGGCGGCAACCAAATGCAAGCAGACAACGATGTCGATATC GGTTATGGTGATGATGATGACGGCGGGGACGTTGGTATGGATGACGACTGA
AA sequence Show only first row Show all	>Lus10038906 pacid=23150657 polypeptide=Lus10038906 locus=Lus10038906.g ID=Lus10038906.BGIv1.0 annot-version=v1.0 MTVVNKEKLQEDVSFKRFCKIVLGWDHYRLLGEADKKKKKKEEDKSDNDLKEVKNTYKDVDDYLSPFEPLLFEEVKANITQNKDDEKVTRWEMRLVTECN EVEGFFQVAITYNGDADENRISQNDLLLLQKETTKTTAYAYALVEHTQNNCLRLRMCLAGEIKNTRLDVAESSPRLLNMQSHITAPLNPEQKPLFSLKIC SLSTISREYIALRSIGSLPFKDLILKAADRPDSEDQGWKVSEALRGHFEETLNLSQLDAVNAGLSHKRFVLIQGPPGTGKTQTILALLSAILHATPARVH LKAGSRETKCGPQFSVQDKYNHWARASPWLTGIDPRDEIMPKGGDDGFFPTTGSELKPEIVASSRRYRLRVLVCAPSNSALDEIVLRLLRNGVRDETVST YNPKIVRIGLKAHHSVQSVCMDYLVRQKQNESNKQRQGAAGGDTDNIGSSILDEADIVFSTLSFSGSALFSKLNHSFDVVIIDEAAQAVEPATLVPLSNG CKQVFLVGDPVQLPATVISSTASKFGYCTSLFERFQSAGYPVNMLKMQYRMHPEIRTFPSSEFYSEALEDAADMEQKTRRDWHKYRCFSPFCFFDLHESQ ESQSSGSGSYENTDEAEFVLLLYRKLVSMHPELGLSSQFAMISPYRSQVKLLQDRFKENFGQDSREFADIQTVDGFQGREKDVAIFSCVRASENKGIGFV SDFRRMNVGITRAKSTVLVVGSAATLRRDEHWTNLIESAEKRNVLFKVSKPYTSFLSDSSMEAMTVKKEEGVEDEIEEEHDLDFGGNGGNQMQADNDVDI GYGDDDDGGDVGMDDD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G15570		MAA3	MAGATAMA 3, P-loop containing ...		Lus10038906 [exp]	0	1
AT3G19440			Pseudouridine synthase family ...		Lus10002811 [exp]	9.3	0.7612
AT5G60370			unknown protein		Lus10038466 [exp]	10.0	0.7400
AT3G01280		VDAC1, ATVDAC1	ARABIDOPSIS THALIANA VOLTAGE D...		Lus10036716 [exp]	11.0	0.7258
AT3G53760		ATGCP4	GAMMA-TUBULIN COMPLEX PROTEIN ...		Lus10029779 [exp]	14.0	0.7648
AT3G18060			transducin family protein / WD...		Lus10042944 [exp]	28.0	0.7088
AT4G10650			P-loop containing nucleoside t...		Lus10014654 [exp]	32.4	0.6538
AT1G01950		AtKINUb, ARK2	Arabidopsis thaliana KINESIN U...		Lus10038696 [exp]	36.7	0.6725
AT1G15860			Domain of unknown function (DU...		Lus10040019 [exp]	37.0	0.7086
AT3G53320			unknown protein		Lus10026478 [exp]	37.5	0.7233
AT1G61670			Lung seven transmembrane recep...		Lus10030521 [exp]	41.3	0.6587

Compare expression of checked genes

Lus10038906 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.