Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51570 493 / 2e-178 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) AT5G62740 325 / 6e-112 AtHIR4, ATHIR1 hypersensitive induced reaction 4, HYPERSENSITIVE-INDUCED RESPONSE PROTEIN 1, SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) AT3G01290 321 / 2e-110 AtHIR2 hypersensitive induced reaction 2, SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) AT1G69840 303 / 2e-103 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1.2.3.4.5.6.7) AT5G54100 56 / 7e-09 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) AT4G27585 53 / 7e-08 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015032 [exp] 549 / 0 AT5G51570 532 / 0.0 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Lus10007268 [exp] 325 / 8e-112 AT5G62740 510 / 0.0 hypersensitive induced reaction 4, HYPERSENSITIVE-INDUCED RESPONSE PROTEIN 1, SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Lus10033099 [exp] 325 / 9e-112 AT5G62740 533 / 0.0 hypersensitive induced reaction 4, HYPERSENSITIVE-INDUCED RESPONSE PROTEIN 1, SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Lus10015356 [exp] 323 / 3e-111 AT5G62740 506 / 0.0 hypersensitive induced reaction 4, HYPERSENSITIVE-INDUCED RESPONSE PROTEIN 1, SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Lus10004268 [exp] 308 / 2e-105 AT5G62740 535 / 0.0 hypersensitive induced reaction 4, HYPERSENSITIVE-INDUCED RESPONSE PROTEIN 1, SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Lus10037213 [exp] 302 / 4e-103 AT1G69840 514 / 0.0 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1.2.3.4.5.6.7) Lus10036715 [exp] 302 / 7e-103 AT1G69840 516 / 0.0 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1.2.3.4.5.6.7) Lus10032909 [exp] 56 / 9e-09 AT4G27585 498 / 4e-176 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Lus10015597 [exp] 47 / 7e-06 AT4G27585 383 / 7e-130 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G129000 [exp] 496 / 2e-179 AT5G51570 480 / 4e-173 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Potri.015G130600 [exp] 494 / 9e-179 AT5G51570 510 / 0.0 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Potri.017G078100 [exp] 322 / 9e-111 AT5G62740 488 / 3e-176 hypersensitive induced reaction 4, HYPERSENSITIVE-INDUCED RESPONSE PROTEIN 1, SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Potri.017G078000 [exp] 312 / 8e-107 AT5G62740 518 / 0.0 hypersensitive induced reaction 4, HYPERSENSITIVE-INDUCED RESPONSE PROTEIN 1, SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Potri.012G070500 [exp] 306 / 8e-105 AT5G62740 484 / 3e-175 hypersensitive induced reaction 4, HYPERSENSITIVE-INDUCED RESPONSE PROTEIN 1, SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Potri.015G065001 [exp] 179 / 2e-55 AT5G62740 312 / 4e-108 hypersensitive induced reaction 4, HYPERSENSITIVE-INDUCED RESPONSE PROTEIN 1, SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Potri.015G001900 [exp] 52 / 2e-07 AT4G27585 499 / 2e-176 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Potri.012G005500 [exp] 49 / 1e-06 AT4G27585 463 / 3e-162 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Potri.012G009800 [exp] 49 / 2e-06 AT4G27585 382 / 3e-130 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0433 [flax] [poplar] SPFH PF01145 [flax] [poplar] Band_7 SPFH domain / Band 7 family
Representative CDS sequence Show only first row Show all	>Lus10038907 pacid=23150308 polypeptide=Lus10038907 locus=Lus10038907.g ID=Lus10038907.BGIv1.0 annot-version=v1.0 ATGGGGAATGCGTTCTGCGTCTTCTGCGGATGCGTTGATCAAGCGAGCATCGGCATAGTGGAGCGATGGGGCCGGTTCGAGAGATTGGCCGAGCCAGGTC TTCACTTCTTCAACCCCTTCGTTGGCCAGTGCCTCTCCGGGATTCTGTCCACCAGGATCCAGTCGCTCGACGTTCGCGTCGAGACCAAAACGAAGGACAA TGTGTTTGTGCAATTGGTTTGCTCCATTCAATACCGGGTCGTGAAAGCAAATGCTGATGATGCTTTCTACGAGCTGGCGAATCCTCAAGAGCAGATTCAG GCCTATGTGTTTGATGTGGTTCGAGCTATTGTTCCTCGGATGACGTTGGATGAGCTCTTTGAACAGAAGGGAGAGGTCGCTAAGGCAGTATTGGAGGAAC TCGAGAAGGTAATGGGTGCTTACGGGTACAACATAGAGCATATCCTGATGGTTGACATTATACCGGATCCCTCTGTGCGCAAGGCTATGAACGAGATCAA CGCAGCTCAAAGGCTCCAGCTTGCCAGCGTATACAAAGGCGAAGCGGAGAAGATACTCTTAGTCAAGAAGGCAGAGGCCGAAGCTGAGGCCAAGTACCTT GGAGGAGTCGGTGTCGCCAAGCAGAGGCAGGCCATTACGGACGGACTTCGAGAGAACATCTTGAACTTCTCAAACACGGTCGAAGGCACGAGTTCCAAGG AAGTGATGGACCTGATCATGATCACTCAGTACTTCGACACGATCAAGGACCTCGGCAACTCGTCCAAGAACACCACCGTCTTCATCCCCCACGGCCCTGG CCATGTTCGCGACATCGGCGATCAGATTCGCAATGGTATGATGGAGGCTGCTTGTGCACCGGTGAAGATCGAATGA
AA sequence Show only first row Show all	>Lus10038907 pacid=23150308 polypeptide=Lus10038907 locus=Lus10038907.g ID=Lus10038907.BGIv1.0 annot-version=v1.0 MGNAFCVFCGCVDQASIGIVERWGRFERLAEPGLHFFNPFVGQCLSGILSTRIQSLDVRVETKTKDNVFVQLVCSIQYRVVKANADDAFYELANPQEQIQ AYVFDVVRAIVPRMTLDELFEQKGEVAKAVLEELEKVMGAYGYNIEHILMVDIIPDPSVRKAMNEINAAQRLQLASVYKGEAEKILLVKKAEAEAEAKYL GGVGVAKQRQAITDGLRENILNFSNTVEGTSSKEVMDLIMITQYFDTIKDLGNSSKNTTVFIPHGPGHVRDIGDQIRNGMMEAACAPVKIE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G51570			SPFH/Band 7/PHB domain-contain...		Lus10038907 [exp]	0	1
AT4G33440			Pectin lyase-like superfamily ...		Lus10014799 [exp]	2.4	0.8622
AT3G52430		PAD4, ATPAD4	ARABIDOPSIS PHYTOALEXIN DEFICI...		Lus10039617 [exp]	6.5	0.8411
AT3G15510	NAC	ATNAC2, ANAC056...	NAC-REGULATED SEED MORPHOLOGY ...		Lus10032657 [exp]	7.0	0.8355
					Lus10033310 [exp]	7.6	0.8603
AT2G46550			unknown protein		Lus10023163 [exp]	8.4	0.8458
AT2G01620		MEE11	maternal effect embryo arrest ...		Lus10007930 [exp]	8.5	0.8526
AT3G50930		BCS1	cytochrome BC1 synthesis (.1)		Lus10041918 [exp]	8.7	0.8040
AT5G51570			SPFH/Band 7/PHB domain-contain...		Lus10015032 [exp]	11.7	0.8466
AT3G57810			Cysteine proteinases superfami...		Lus10028840 [exp]	11.9	0.7812
AT4G25230		RIN2	RPM1 interacting protein 2 (.1...		Lus10031152 [exp]	12.0	0.8245

Compare expression of checked genes

Lus10038907 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.