Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00100 289 / 4e-102 PFL2, ATRPS13A POINTED FIRST LEAF 2, ribosomal protein S13A (.1) AT3G60770 286 / 5e-101 Ribosomal protein S13/S15 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027192 [exp] 305 / 1e-108 AT4G00100 289 / 4e-102 POINTED FIRST LEAF 2, ribosomal protein S13A (.1) Lus10031704 [exp] 284 / 3e-100 AT4G00100 267 / 9e-94 POINTED FIRST LEAF 2, ribosomal protein S13A (.1) Lus10031124 [exp] 284 / 3e-100 AT4G00100 267 / 9e-94 POINTED FIRST LEAF 2, ribosomal protein S13A (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G130000 [exp] 295 / 1e-104 AT4G00100 283 / 7e-100 POINTED FIRST LEAF 2, ribosomal protein S13A (.1) Potri.002G146800 [exp] 291 / 5e-103 AT3G60770 287 / 1e-101 Ribosomal protein S13/S15 (.1) Potri.014G068600 [exp] 290 / 2e-102 AT3G60770 291 / 4e-103 Ribosomal protein S13/S15 (.1) Potri.012G128600 [exp] 288 / 6e-102 AT4G00100 288 / 6e-102 POINTED FIRST LEAF 2, ribosomal protein S13A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0600 [flax] [poplar] S15_NS1 PF00312 [flax] [poplar] Ribosomal_S15 Ribosomal protein S15 CL0600 [flax] [poplar] PF08069 [flax] [poplar] Ribosomal_S13_N Ribosomal S13/S15 N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10038908 pacid=23150397 polypeptide=Lus10038908 locus=Lus10038908.g ID=Lus10038908.BGIv1.0 annot-version=v1.0 ATGGGTCGTATGCACAGCAGAGGTAAGGGTATTTCAGCTTCAGCTCTGCCTTACAAGAGAACCCCGCCGAGCTGGCTGAAGATCTCTTCCCAAGATGTTG AGGAGAACATCTGCAAGTTTGCGAAGAAGGGTTTGACTCCATCGCAGATTGGTGTCATCCTTCGTGATTCTCATGGTATTGCTCAGGTCAGGAGCGTCAC TGGAAGCAAGATCCTCCGTATTCTTAAAGCCAGTGGCCTTGCCCCTGAGATCCCTGAGGATCTGTACCACCTCATTAAGAAGGCTGTTGCAATCAGGAAG CACTTGGAGAGGAACAGGAAGGACAAGGATTCCAAGTTTCGCCTGATTCTCGTAGAAAGCAGGATCCACAGACTTGCTCGCTACTACAAGAAGACCAAGA AGCTCCCCCCTGTCTGGAAATACGAGTCCACCACCGCGAGCACTCTCGTTGCTTAA
AA sequence Show only first row Show all	>Lus10038908 pacid=23150397 polypeptide=Lus10038908 locus=Lus10038908.g ID=Lus10038908.BGIv1.0 annot-version=v1.0 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEENICKFAKKGLTPSQIGVILRDSHGIAQVRSVTGSKILRILKASGLAPEIPEDLYHLIKKAVAIRK HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G00100		PFL2, ATRPS13A	POINTED FIRST LEAF 2, ribosoma...		Lus10038908 [exp]	0	1
AT3G62870			Ribosomal protein L7Ae/L30e/S1...		Lus10012463 [exp]	1.7	0.9768
AT4G00100		PFL2, ATRPS13A	POINTED FIRST LEAF 2, ribosoma...		Lus10027192 [exp]	2.4	0.9622
AT3G27740		VEN6, CARA	VENOSA 6, carbamoyl phosphate ...		Lus10039874 [exp]	5.5	0.9542
AT2G40510			Ribosomal protein S26e family ...		Lus10034223 [exp]	6.6	0.9562
AT1G61580		RPL3B, ARP2	ARABIDOPSIS RIBOSOMAL PROTEIN ...		Lus10035786 [exp]	6.9	0.9567
AT5G11880			Pyridoxal-dependent decarboxyl...		Lus10040433 [exp]	10.5	0.9425
AT4G34740		CIA1, ATASE2, A...	CHLOROPLAST IMPORT APPARATUS 1...		Lus10042058 [exp]	10.9	0.9242
AT5G16750		TOZ	TORMOZEMBRYO DEFECTIVE, Transd...		Lus10001301 [exp]	11.2	0.9430
AT2G31610			Ribosomal protein S3 family pr...		Lus10012857 [exp]	11.2	0.9559
AT2G34480			Ribosomal protein L18ae/LX fam...		Lus10040332 [exp]	12.5	0.9490

Compare expression of checked genes

Lus10038908 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.