Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62290 272 / 7e-93 nucleotide-sensitive chloride conductance regulator (ICln) family protein (.1), nucleotide-sensitive chloride conductance regulator (ICln) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027193 [exp] 397 / 2e-142 AT5G62290 274 / 8e-94 nucleotide-sensitive chloride conductance regulator (ICln) family protein (.1), nucleotide-sensitive chloride conductance regulator (ICln) family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G129900 [exp] 298 / 4e-103 AT5G62290 278 / 2e-95 nucleotide-sensitive chloride conductance regulator (ICln) family protein (.1), nucleotide-sensitive chloride conductance regulator (ICln) family protein (.2) Potri.012G128500 [exp] 296 / 2e-102 AT5G62290 256 / 9e-87 nucleotide-sensitive chloride conductance regulator (ICln) family protein (.1), nucleotide-sensitive chloride conductance regulator (ICln) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0266 [flax] [poplar] PH PF03517 [flax] [poplar] Voldacs Regulator of volume decrease after cellular swelling
Representative CDS sequence Show only first row Show all	>Lus10038909 pacid=23150373 polypeptide=Lus10038909 locus=Lus10038909.g ID=Lus10038909.BGIv1.0 annot-version=v1.0 ATGGTTCCAGGTCTGAGACAATCCACCGAACGAACGACGGAAGGCGCCACTGGAGAACCGGTGCTCGACATTGCAAACGGCGAGGAGCTGGTGCATTCTC AGCCTGCTGTCGCCATTGCCGTCGGCAATCGATCTATAGAGTCTCCCGGAACTCTCTACATCTCCTCCAAGAAGGTTGTTTGGTTGAGCGACGTCGACAG AGAAAAAGGATACGCAGTTGATTTCTTGTCTCTTTCGCTTCATGCTGTGTCCAGGGATCCCGAAGCATATCCTTCTCCTTGCATTTACGCTCAGATCGAG ACAGGACACGACGAAGATGACTCGGATGGCTCAGATTCGGATAACCATGATCCAGTAGACTTATCCAGGGTAACCGAGATGAGGCTTATTCCTTCAGATC CTAGCCAATTGGATCATTTGTTCCAAGTATTCTGTGAATGTGCAGAGCTCAATCCTGAACCAATTGATGAGGATGTGCAAATGGGTGGTAACAGCTGGAT CTTCAGCGCTGACCAGATGGCCGATGAAGGAGCAGACGAGGAAGGCCCTGATTGGAGTTTCTTCCAAACTCTAACGAGCTCCATTGGTCACTCTAACGGT GATGCTGACCTTTCCCGCAATGTTCTCGAGCTGCAAATCAACGACCAACGTTTTGAAGATGCTGAAGAGATGGATCGCGAGAAGGAGAATTGA
AA sequence Show only first row Show all	>Lus10038909 pacid=23150373 polypeptide=Lus10038909 locus=Lus10038909.g ID=Lus10038909.BGIv1.0 annot-version=v1.0 MVPGLRQSTERTTEGATGEPVLDIANGEELVHSQPAVAIAVGNRSIESPGTLYISSKKVVWLSDVDREKGYAVDFLSLSLHAVSRDPEAYPSPCIYAQIE TGHDEDDSDGSDSDNHDPVDLSRVTEMRLIPSDPSQLDHLFQVFCECAELNPEPIDEDVQMGGNSWIFSADQMADEGADEEGPDWSFFQTLTSSIGHSNG DADLSRNVLELQINDQRFEDAEEMDREKEN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G62290			nucleotide-sensitive chloride ...		Lus10038909 [exp]	0	1
AT1G52980		AtNug2	nuclear/nucleolar GTPase 2, GT...		Lus10023835 [exp]	1.4	0.9066
AT5G47680		AtTRM, TRM10	tRNA modification 10, unknown ...		Lus10038778 [exp]	7.6	0.8992
AT1G60640			unknown protein		Lus10033578 [exp]	8.0	0.8751
AT2G03670		CDC48B	cell division cycle 48B (.1)		Lus10018033 [exp]	8.8	0.8647
AT2G47580		U1A	spliceosomal protein U1A (.1)		Lus10008424 [exp]	12.4	0.8642
AT2G18410			unknown protein		Lus10009164 [exp]	15.3	0.8348
AT2G36620		RPL24A	ribosomal protein L24 (.1)		Lus10029583 [exp]	16.1	0.8780
AT3G15080			Polynucleotidyl transferase, r...		Lus10011026 [exp]	17.0	0.8688
AT4G39380			unknown protein		Lus10020841 [exp]	17.5	0.8292
AT1G34030			Ribosomal protein S13/S18 fami...		Lus10034179 [exp]	17.9	0.8720

Compare expression of checked genes

Lus10038909 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.