Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02000 417 / 9e-147 GAE2 UDP-D-glucuronate 4-epimerase 2 (.1) AT4G00110 410 / 3e-144 GAE3 UDP-D-glucuronate 4-epimerase 3 (.1) AT2G45310 401 / 1e-140 GAE4 UDP-D-glucuronate 4-epimerase 4 (.1) AT3G23820 374 / 2e-129 GAE6 UDP-D-glucuronate 4-epimerase 6 (.1) AT4G12250 370 / 2e-128 GAE5 UDP-D-glucuronate 4-epimerase 5 (.1) AT4G30440 356 / 9e-123 GAE1 UDP-D-glucuronate 4-epimerase 1 (.1) AT3G14790 66 / 3e-12 ATRHM3, RHM3 ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 3, rhamnose biosynthesis 3 (.1) AT1G53500 64 / 2e-11 ATRHM2, ATMUM4, RHM2, MUM4 ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 2, ARABIDOPSIS THALIANA MUCILAGE-MODIFIED 4, NAD-dependent epimerase/dehydratase family protein (.1) AT1G78570 59 / 8e-10 ATRHM1, RHM1, ROL1 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) AT1G47290 45 / 2e-05 AT3BETAHSD/D1 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027195 [exp] 483 / 2e-175 AT1G02000 441 / 4e-156 UDP-D-glucuronate 4-epimerase 2 (.1) Lus10009288 [exp] 398 / 2e-139 AT4G00110 704 / 0.0 UDP-D-glucuronate 4-epimerase 3 (.1) Lus10000787 [exp] 396 / 2e-138 AT4G00110 731 / 0.0 UDP-D-glucuronate 4-epimerase 3 (.1) Lus10030281 [exp] 396 / 3e-138 AT4G00110 753 / 0.0 UDP-D-glucuronate 4-epimerase 3 (.1) Lus10015876 [exp] 395 / 7e-138 AT4G00110 751 / 0.0 UDP-D-glucuronate 4-epimerase 3 (.1) Lus10031127 [exp] 390 / 2e-136 AT4G00110 574 / 0.0 UDP-D-glucuronate 4-epimerase 3 (.1) Lus10032391 [exp] 380 / 3e-132 AT1G02000 620 / 0.0 UDP-D-glucuronate 4-epimerase 2 (.1) Lus10016640 [exp] 379 / 5e-131 AT3G23820 746 / 0.0 UDP-D-glucuronate 4-epimerase 6 (.1) Lus10015496 [exp] 377 / 8e-131 AT4G30440 764 / 0.0 UDP-D-glucuronate 4-epimerase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G128200 [exp] 405 / 1e-142 AT1G02000 544 / 0.0 UDP-D-glucuronate 4-epimerase 2 (.1) Potri.014G068400 [exp] 398 / 2e-139 AT1G02000 714 / 0.0 UDP-D-glucuronate 4-epimerase 2 (.1) Potri.002G146500 [exp] 397 / 5e-139 AT1G02000 724 / 0.0 UDP-D-glucuronate 4-epimerase 2 (.1) Potri.017G059100 [exp] 384 / 2e-133 AT3G23820 724 / 0.0 UDP-D-glucuronate 4-epimerase 6 (.1) Potri.001G320000 [exp] 382 / 8e-133 AT3G23820 714 / 0.0 UDP-D-glucuronate 4-epimerase 6 (.1) Potri.003G114600 [exp] 374 / 6e-130 AT4G12250 587 / 0.0 UDP-D-glucuronate 4-epimerase 5 (.1) Potri.018G100400 [exp] 353 / 1e-121 AT4G30440 771 / 0.0 UDP-D-glucuronate 4-epimerase 1 (.1) Potri.006G178500 [exp] 347 / 2e-119 AT4G30440 757 / 0.0 UDP-D-glucuronate 4-epimerase 1 (.1) Potri.002G116750 [exp] 174 / 3e-55 AT2G45310 209 / 6e-67 UDP-D-glucuronate 4-epimerase 4 (.1) Potri.006G272700 [exp] 64 / 2e-11 AT1G78570 1078 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01370 [flax] [poplar] Epimerase NAD dependent epimerase/dehydratase family
Representative CDS sequence Show only first row Show all	>Lus10038911 pacid=23150554 polypeptide=Lus10038911 locus=Lus10038911.g ID=Lus10038911.BGIv1.0 annot-version=v1.0 ATGAAAAACCCCGCCTCCTACGTCCACAGCAACATCGCCGGACTGGTCACCCTCTTCGAAGCTTGCAAAGCCGCCGATCCGCAACCAGCGATCGTCTGGG CTTCTTCCAGCTCAGTCTACGGCCTCAACACCAAAGTCCCCTTCTCCGAGAAGGACCGGACTGATTCTCCGTCGAGTCTCTACGCCGCAACTAAAAAGGC CGGCGAGGAGATGGCCCACACTTACAACCACATCTACGGGCTTTCCATAACGGGCTTGAGATTCTTCACCGTATATGGACCGTGGGGCAGGCCTGACATG GCCTACTTCTTCTTCACTCGCGACATACTAAAAGGAAAGCCCATTAGTATCTACGAAGGTCCCAATCATTTCACGGTGGCTAGGGATTTCACTTACATCG ATGATATCGTTAAAGGATTGCTCGGAGCTCTTGACACGGCGGAGAAGAGCACCGGAAGCGGCGGAGTGAAGAGAGGGAAAGCGCAATTGAGAGTTTACAA CTTGGGGAATACTTCGCCGGTTCCGGTGGCGAAGCTTGTGAGTATATTGGAGAAGCTGTTGAAGGTTAAAGCGAAGAAGAAGGTGATGGCGATGCCGGCA AATGGAGATGTGTTGTTTACTCACGCGAATATCAGTCAGGCGCAGAGGGATTTTGGTTACAAGCCAAGTACGGATTTGCAAACTGGGTTGAAGAAGTTTG TGAAGTGGTACTTGGATTACTATCATCCTGGAGGAGTTGCCAAGAGTTCGTTGTGA
AA sequence Show only first row Show all	>Lus10038911 pacid=23150554 polypeptide=Lus10038911 locus=Lus10038911.g ID=Lus10038911.BGIv1.0 annot-version=v1.0 MKNPASYVHSNIAGLVTLFEACKAADPQPAIVWASSSSVYGLNTKVPFSEKDRTDSPSSLYAATKKAGEEMAHTYNHIYGLSITGLRFFTVYGPWGRPDM AYFFFTRDILKGKPISIYEGPNHFTVARDFTYIDDIVKGLLGALDTAEKSTGSGGVKRGKAQLRVYNLGNTSPVPVAKLVSILEKLLKVKAKKKVMAMPA NGDVLFTHANISQAQRDFGYKPSTDLQTGLKKFVKWYLDYYHPGGVAKSSL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G02000		GAE2	UDP-D-glucuronate 4-epimerase ...		Lus10038911 [exp]	0	1
AT1G31850			S-adenosyl-L-methionine-depend...		Lus10034729 [exp]	2.0	0.8537
AT1G02000		GAE2	UDP-D-glucuronate 4-epimerase ...		Lus10027195 [exp]	2.2	0.8666
AT3G02350		GAUT9	galacturonosyltransferase 9 (....		Lus10003045 [exp]	6.2	0.8471
AT4G36660			Protein of unknown function (D...		Lus10026030 [exp]	9.4	0.8450
AT5G06700		TBR	TRICHOME BIREFRINGENCE, Plant ...		Lus10021066 [exp]	11.2	0.8356
AT1G29470			S-adenosyl-L-methionine-depend...		Lus10042767 [exp]	12.2	0.8266
AT4G23900			Nucleoside diphosphate kinase ...		Lus10003878 [exp]	14.0	0.7923
AT2G15220			Plant basic secretory protein ...		Lus10013868 [exp]	14.6	0.7356
AT1G31850			S-adenosyl-L-methionine-depend...		Lus10033277 [exp]	15.0	0.7804
AT1G29470			S-adenosyl-L-methionine-depend...		Lus10029736 [exp]	16.1	0.8169

Compare expression of checked genes

Lus10038911 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.