Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62310 1363 / 0 IRE INCOMPLETE ROOT HAIR ELONGATION, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) AT3G17850 966 / 0 Protein kinase superfamily protein (.1) AT1G48490 898 / 0 Protein kinase superfamily protein (.1.2.3) AT1G45160 571 / 0 Protein kinase superfamily protein (.1.2) AT1G30640 280 / 2e-82 Protein kinase family protein (.1) AT4G14350 274 / 3e-80 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein AT3G23310 271 / 6e-79 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) AT2G20470 265 / 6e-77 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) AT4G33080 264 / 7e-77 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1), AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.2) AT1G03920 259 / 1e-74 Protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027196 [exp] 2118 / 0 AT5G62310 1484 / 0.0 INCOMPLETE ROOT HAIR ELONGATION, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Lus10031332 [exp] 930 / 0 AT3G17850 1526 / 0.0 Protein kinase superfamily protein (.1) Lus10031906 [exp] 725 / 0 AT1G48490 1358 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10005470 [exp] 600 / 0 AT1G45160 977 / 0.0 Protein kinase superfamily protein (.1.2) Lus10021176 [exp] 270 / 5e-79 AT4G14350 861 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein Lus10011814 [exp] 269 / 7e-79 AT4G14350 888 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein Lus10033911 [exp] 259 / 1e-74 AT2G20470 831 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Lus10003541 [exp] 258 / 2e-74 AT2G20470 850 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Lus10042650 [exp] 252 / 1e-72 AT5G09890 857 / 0.0 Protein kinase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G127800 [exp] 1450 / 0 AT5G62310 1318 / 0.0 INCOMPLETE ROOT HAIR ELONGATION, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Potri.015G129200 [exp] 1438 / 0 AT5G62310 1359 / 0.0 INCOMPLETE ROOT HAIR ELONGATION, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Potri.012G044700 [exp] 783 / 0 AT3G17850 1531 / 0.0 Protein kinase superfamily protein (.1) Potri.015G035600 [exp] 778 / 0 AT3G17850 1543 / 0.0 Protein kinase superfamily protein (.1) Potri.002G263000 [exp] 603 / 0 AT1G45160 1162 / 0.0 Protein kinase superfamily protein (.1.2) Potri.008G167800 [exp] 274 / 4e-80 AT4G14350 905 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein Potri.011G157000 [exp] 267 / 2e-77 AT4G14350 800 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein Potri.010G070600 [exp] 265 / 3e-77 AT4G14350 894 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein Potri.005G226700 [exp] 261 / 2e-75 AT2G20470 826 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Potri.002G036200 [exp] 258 / 3e-74 AT2G20470 857 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10038912 pacid=23150704 polypeptide=Lus10038912 locus=Lus10038912.g ID=Lus10038912.BGIv1.0 annot-version=v1.0 ATGTCAAGCTACCCGCCGCCAACCTCCGATAACGCCGAACCGTCGGCTGCGACGGCGTCGTCGTCATCCTCTACGCCGACTTCGTGTAAGCTCAGGAAGA TCCCTCCCATTCCTTTGCGGCGGATGCACAGGTCAGACGTTGCCGAAATGACGCTAGACGATTTCACCAATTTCTCCCGCAACAACGGAGAAGACTGGGA GGTGGAGGAGGATGACGAAGGAAGGGAAATGGAAGAGGAGGAGGAGGAGGAGGAGGACGACGATCCGGGAGCGGAATTGGGAGATTCGGATGGGAAAACG CCGATTATTCTTCCGTCTTCGCTCGGATTGAACCATATCAGGACGCGATCGGCTCCGTCTCCTTCTCCGCTTAGGTTTTCGTCCTCCGCCGGGATGCCGT TGAAGATTCCCAATGCTAAGGAGTCGCGTATTGGTAAGGAGGAGAATGGAGGTGCGGAAGCGAGGACCAAGGCGAAGATGAACAATCAGATACCGCCGAC GGATCCTGGAAGGAAGATTTCGTGGAGTCAATCGAAATCCTTACGGCATACATCGCCGCTCAATATGGCGTTAGAGAGTCGTCATGCGGCGTTTGCCAAG GAAATGCATTCGCCGCGTTTCCAGGCCATTCTACGGGTTACCAGTGGCAGGAAAAAGAAAGCTCCCGATGTCGAGAGCTTCTCCCATGAACTTAATTCCA AAGGTGTTCGGCCTTTCCCAATGTGGAAGTCTAGAGCAGTTGGACACATGGAAGAGATAATGGTGGCAATCAGGGCTAAATTTGACAAGTTGAAGGATGA AGTAGACTGTGATTTAGGTATATTTGCTGGGGACTTGGTCAGCATTCTGGAAAAGATGTCCGAGTTTAATCCTGAATGGAGAGAGAGTTTGGAGGACTTG TTGCTTATAGCTAGAAGATGTGCAAAGATGTCGTCTAGTGAGTTTTGGGTGAAATGCGAGGGAATTGTTCAGAGTTTAGATGACAGGCGCCAAGAGCTGC CAATGGGGACCCTTAAGCAAGCACATACGAGGCTTTTGTTCATCCTCACTCGATGCTCTAGGCTTGTGCAGTTTCAAAAAGAGAGTTGTTACGAGGAAGA AAACATTCTGGGTCTTCATCAACTGAGTGATCTTGGAGTTTATCCGGAGCAAATGTTGGAGCTTGCTCATCAGGATTATAGTGGCCCGATAGTGGCGGAA AAGTTGTTAGCTGAGAGCCAGAAGAAGAAGTTTCATGATGAGCAAGTTAGTGCGGTTGTGAAACTTGAACCGGTAGAGCCAGAGGTTAGTTCTGCCAAAA GTGCCGATTCAAGTTCAAGCAGCTATAAGATGTCATCTTGGAAAAAGCTTCCAAGTGCCCTTGAGAGACAGAGGAAAGCCCTTGATGCAGTTGATACACC TCTGAAAGCAAAATCAGAGCCATCGGAAATCATAGGCGAGGCAGGTGATGAAAACTCTGAAACTGTCGAAACTCCTGCACCCCCTCCATCCACAGGACTG AGAAAAACTTCTTGGGGCTACTGGGGAGAGCATCATAACCTTTCCTATGATAATTCAATGATATGTCGGATATGTGAGGTGGAGATACCAATTGTTCACG TGGAAGAGCATTCTCTAATCTGTACCATTGCTGACAGATGTGATCTAAAGGGATTAACTATTAACGAACGACTTGAAAGGGTGGCCGAAACTCTTGATAA GGTTTTGGAATCATGGACGCCGAAAAGCACTCCGAAAAGTGGTGATACCCCGAGAGGAAGTTCACGTGAACTGGATGAGGGAGATAGGTCATTTCATCAT TGTGCAGAAGACATGCTGGAAGGTGTGGTTGATGCAGAGACTGCATTCGTTGTCGAAGATCTTAATGTTCTTCCAGCAATTTCAGCGGAGTCACGTTCAA GTCTGGCACCTGATGTAGACTTGAAAGCCTCATCATCTGGAAGCTTGACGCCACGTTCACCGTCGTTAACACCGCGGACCAGCCAGATTGCCTTGCTAAT AAGTGGAAGGAGAACAATTTCAGAACTGGAGAATAATCAGCAGATAACCAAGTTACTTGAAATTGCACGTTCTGTTTCAAATCTAAACGGCGTCGACTAC GGTTCACTGGAGTCCATGCTTGATCGTCTGGATGACTTGAAGTATGCCATACAGGACAGAAAGGTGGACGCCCTCATTGTAGAGACTTTCGGACGACGTA TAGAGAAATTGTTACAGGAGAAATATGTGCAGCTGTGTGCACAAATAGACGATGATAAACTAGACCATTCAAATCATATGGCTGACGATGAGAGTTCTGT GGAAGAAGATACAATCCGCAGTTTGCGTGCAAGTCCTATGAATACATGTTCTAAGGACCGAACGTCCATAGAAGATTTCGAAATCATAAAACCAATAAGC AGGGGAGCTTTTGGACGGGTTTTCCTCGCCAGAAAAAGAGCAACTGGTGACTTGTTTGCTATAAAGATTTTAAAAAAGGCTGATATGATCCGCAAAAATG CTGTCGAAAGCATATTGGCAGAACGGAACATCCTGATTTCAGTTCGCAATCCTTTTGTGGTCCGATTTTTCTACTCCTTCACATGCAGGGAAAATCTCTA TCTAGTTATGGAGTATCTAAACGGTGGTGATCTGTACTCTTTGTTAAGAAACCTTGGCTGCTTAGACGAGGACATGGCTCGTGTATATATCGCAGAACTC GTGCTTGCTTTGGAGTATCTGCACACTTTGAATGTGATCCATAGAGACCTGAAGCCGGACAACTTGTTGATTTCTCAGGATGGTCATATTAAGTTGACAG ATTTCGGGCTATCCAAGGTCGGTCTCATAGACAGCACAGATGACTTGTCTGGTCCGCTAAGAAGTCCTGCGTTTCTCAACAATAATGCACGAAGTGAGGA GACCGAATTGATGAGAGAAGAGCGACGAAAACATTCGGTTGTTGGTACTCCAGATTATTTGGCTCCTGAGATTCTTCTTGGCATGGGACACGGTACAACT GCAGATTGGTGGTCCGTGGGGGTTATTCTTTTTGAGCTGCTTGTTGGTATCCCTCCATTCAATGCGTCATCTCCTCAGCTAATATTTGACAATATAATGA ATAGAGATATTCCTTGGCCAAGGGTACCTGATGAGCTGGGCTACGAAGCATATGACTTGATTGACAAACTGCTTACTGAAAACCCAATTCAAAGACTAGG TGCAACTGGAGCCAAAGAGGTGAAGCATCACGCTTTCTTCAGGGACATCAACTGGGACACGCTAGCAAGGCAAAAGGCTACATTCATACCAGCAGGAGAA GCACACGACACGAGCTACTTCATGAGCCGGTACATATGGAACCCTGAAGACGACAATGTCCGTGGAGCCAGTGATTTCGACGACCTCACTGACTCAACGA CTAGTTCAATTGGAAACACACCCGAAGAGGAGGGAGATGAATGTGGTAGCTTAACTGACTTCGGAGGACCAACACTCGCAGTGAAGTACTCATTCAGTAA CTTCTCTTTCAAGAACTTGTCCCAGTTGGCTTCGATCAACTACGACATGGTCATCAAGAACAGCAAAGAAGCAGCTGACAAGCAATCTGTTCCATAG
AA sequence Show only first row Show all	>Lus10038912 pacid=23150704 polypeptide=Lus10038912 locus=Lus10038912.g ID=Lus10038912.BGIv1.0 annot-version=v1.0 MSSYPPPTSDNAEPSAATASSSSSTPTSCKLRKIPPIPLRRMHRSDVAEMTLDDFTNFSRNNGEDWEVEEDDEGREMEEEEEEEEDDDPGAELGDSDGKT PIILPSSLGLNHIRTRSAPSPSPLRFSSSAGMPLKIPNAKESRIGKEENGGAEARTKAKMNNQIPPTDPGRKISWSQSKSLRHTSPLNMALESRHAAFAK EMHSPRFQAILRVTSGRKKKAPDVESFSHELNSKGVRPFPMWKSRAVGHMEEIMVAIRAKFDKLKDEVDCDLGIFAGDLVSILEKMSEFNPEWRESLEDL LLIARRCAKMSSSEFWVKCEGIVQSLDDRRQELPMGTLKQAHTRLLFILTRCSRLVQFQKESCYEEENILGLHQLSDLGVYPEQMLELAHQDYSGPIVAE KLLAESQKKKFHDEQVSAVVKLEPVEPEVSSAKSADSSSSSYKMSSWKKLPSALERQRKALDAVDTPLKAKSEPSEIIGEAGDENSETVETPAPPPSTGL RKTSWGYWGEHHNLSYDNSMICRICEVEIPIVHVEEHSLICTIADRCDLKGLTINERLERVAETLDKVLESWTPKSTPKSGDTPRGSSRELDEGDRSFHH CAEDMLEGVVDAETAFVVEDLNVLPAISAESRSSLAPDVDLKASSSGSLTPRSPSLTPRTSQIALLISGRRTISELENNQQITKLLEIARSVSNLNGVDY GSLESMLDRLDDLKYAIQDRKVDALIVETFGRRIEKLLQEKYVQLCAQIDDDKLDHSNHMADDESSVEEDTIRSLRASPMNTCSKDRTSIEDFEIIKPIS RGAFGRVFLARKRATGDLFAIKILKKADMIRKNAVESILAERNILISVRNPFVVRFFYSFTCRENLYLVMEYLNGGDLYSLLRNLGCLDEDMARVYIAEL VLALEYLHTLNVIHRDLKPDNLLISQDGHIKLTDFGLSKVGLIDSTDDLSGPLRSPAFLNNNARSEETELMREERRKHSVVGTPDYLAPEILLGMGHGTT ADWWSVGVILFELLVGIPPFNASSPQLIFDNIMNRDIPWPRVPDELGYEAYDLIDKLLTENPIQRLGATGAKEVKHHAFFRDINWDTLARQKATFIPAGE AHDTSYFMSRYIWNPEDDNVRGASDFDDLTDSTTSSIGNTPEEEGDECGSLTDFGGPTLAVKYSFSNFSFKNLSQLASINYDMVIKNSKEAADKQSVP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G62310		IRE	INCOMPLETE ROOT HAIR ELONGATIO...		Lus10038912 [exp]	0	1
AT5G62310		IRE	INCOMPLETE ROOT HAIR ELONGATIO...		Lus10027196 [exp]	1.0	0.9353
AT3G49190			O-acyltransferase (WSD1-like) ...		Lus10033678 [exp]	2.4	0.8751
AT4G13630			Protein of unknown function, D...		Lus10007129 [exp]	6.6	0.7912
AT1G25240			ENTH/VHS/GAT family protein (....		Lus10019132 [exp]	6.7	0.7612
AT2G34440	MADS	AGL29	AGAMOUS-like 29 (.1)		Lus10016563 [exp]	6.9	0.7595
					Lus10007835 [exp]	9.4	0.7101
AT1G17930			Aminotransferase-like, plant m...		Lus10004818 [exp]	11.5	0.7348
AT5G24470		APRR5	pseudo-response regulator 5 (....		Lus10008879 [exp]	14.1	0.7543
					Lus10030178 [exp]	15.7	0.7669
AT3G47570			Leucine-rich repeat protein ki...		Lus10030587 [exp]	17.7	0.7024

Compare expression of checked genes

Lus10038912 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.