Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62350 192 / 9e-63 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT3G47380 183 / 5e-59 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT4G25260 171 / 2e-54 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT4G12390 163 / 4e-51 PME1 pectin methylesterase inhibitor 1 (.1) AT1G62770 160 / 4e-50 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT5G62360 153 / 4e-47 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT5G20740 137 / 8e-41 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT2G01610 135 / 6e-40 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT1G62760 135 / 5e-39 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT1G14890 132 / 1e-38 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027198 [exp] 332 / 1e-117 AT5G62350 191 / 3e-62 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10031133 [exp] 227 / 3e-76 AT5G62350 211 / 8e-70 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10031713 [exp] 218 / 1e-72 AT5G62350 202 / 4e-66 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10032230 [exp] 167 / 2e-52 AT1G62770 166 / 9e-52 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10024593 [exp] 153 / 3e-47 AT1G62770 162 / 2e-50 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10031711 [exp] 151 / 2e-46 AT5G62360 145 / 4e-44 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10031138 [exp] 144 / 2e-43 AT5G62360 172 / 3e-54 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10031132 [exp] 137 / 5e-41 AT1G62760 135 / 3e-40 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10038915 [exp] 134 / 2e-39 AT5G62360 174 / 5e-55 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G128700 [exp] 224 / 3e-75 AT5G62350 221 / 7e-74 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.012G127500 [exp] 220 / 9e-74 AT5G62350 220 / 2e-73 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.003G113700 [exp] 176 / 3e-56 AT4G12390 178 / 1e-56 pectin methylesterase inhibitor 1 (.1) Potri.015G128300 [exp] 158 / 2e-49 AT5G62360 192 / 1e-62 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.015G128100 [exp] 156 / 3e-48 AT5G62360 221 / 1e-73 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.015G128200 [exp] 151 / 1e-46 AT5G62360 172 / 1e-54 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.012G127400 [exp] 144 / 9e-44 AT4G25250 150 / 7e-46 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.008G132600 [exp] 138 / 4e-41 AT1G14890 216 / 1e-71 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.001G119300 [exp] 138 / 4e-41 AT1G62760 167 / 3e-51 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.015G128400 [exp] 137 / 7e-41 AT5G62360 134 / 2e-39 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04043 [flax] [poplar] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Lus10038914 pacid=23150452 polypeptide=Lus10038914 locus=Lus10038914.g ID=Lus10038914.BGIv1.0 annot-version=v1.0 ATGGCGACCAACCCCAATTCCCAAACCCTCTTCCTAACAATCTCCACCCTCCTCCTCACCACAACCGCCGCCGCCGACTTCATCAAAACCTCCTGCGCCG CCACAACATACCCAGCCCTCTGCATCCACTCGCTCACACCCTACGCGCCATCCATCAAAACCTCCACGGGCCGCCTGGCCATCACGGCCTTAACAGTCAG CCTCTCCACCGCCCAATCGACGAAATCCTACGTCCGCAAGCTGCAGCCGTCCAAGCCGAGGGAAGCCGCCGCCGTGAAGGACTGCGCCGAGGAGATCGAG GACACCGTGGACCGGCTGAGCCGGTCGATCAAGGAGCTGAAGGCGATGGGCGCGAGTGGGGAGGAGTTCCAGTGGCATTTGAGTAATATCGAGACGTGGG TCAGCGCTGCGTTGACCGACGAGAATACTTGTGTTGACGGATTTGGTGGGAAAGTGATGGATGGGGAGATGAAGGATGCGATAAGGGTTAGGTTTCTGAG GACTGCTAGAGTTACTAGTAATGCTCTGGCTTTGATTAACAAGTTTGGCCGCCGCCATTGA
AA sequence Show only first row Show all	>Lus10038914 pacid=23150452 polypeptide=Lus10038914 locus=Lus10038914.g ID=Lus10038914.BGIv1.0 annot-version=v1.0 MATNPNSQTLFLTISTLLLTTTAAADFIKTSCAATTYPALCIHSLTPYAPSIKTSTGRLAITALTVSLSTAQSTKSYVRKLQPSKPREAAAVKDCAEEIE DTVDRLSRSIKELKAMGASGEEFQWHLSNIETWVSAALTDENTCVDGFGGKVMDGEMKDAIRVRFLRTARVTSNALALINKFGRRH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G62350			Plant invertase/pectin methyle...		Lus10038914 [exp]	0	1
AT3G02645			Plant protein of unknown funct...		Lus10026964 [exp]	1.7	0.8678
AT1G74160			unknown protein		Lus10034677 [exp]	4.9	0.8131
AT1G74160			unknown protein		Lus10017857 [exp]	5.3	0.8430
AT4G11740		SAY1	Ubiquitin-like superfamily pro...		Lus10041365 [exp]	5.5	0.8251
AT1G70180			Sterile alpha motif (SAM) doma...		Lus10014516 [exp]	5.9	0.7480
AT1G30820			CTP synthase family protein (....		Lus10038403 [exp]	9.2	0.8073
AT3G54920		PMR6	powdery mildew resistant 6, Pe...		Lus10037945 [exp]	9.8	0.8013
AT4G38470		STY46	serine/threonine/tyrosine kina...		Lus10022653 [exp]	10.5	0.7666
AT5G13100			unknown protein		Lus10015761 [exp]	13.3	0.7957
AT2G30933			Carbohydrate-binding X8 domain...		Lus10031443 [exp]	16.1	0.7676

Compare expression of checked genes

Lus10038914 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.