Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62360 149 / 1e-45 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT1G62760 139 / 3e-40 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT5G62350 117 / 8e-33 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT1G14890 112 / 5e-31 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT4G25260 111 / 9e-31 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT2G01610 107 / 1e-28 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT1G62770 105 / 2e-28 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT4G25250 99 / 5e-26 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT3G47380 99 / 8e-26 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT5G51520 98 / 2e-25 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027199 [exp] 259 / 7e-89 AT5G62360 169 / 3e-53 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10031138 [exp] 154 / 3e-47 AT5G62360 172 / 3e-54 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10028910 [exp] 134 / 4e-39 AT1G62760 169 / 1e-51 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10031717 [exp] 133 / 7e-39 AT5G62360 179 / 3e-57 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10031133 [exp] 129 / 1e-37 AT5G62350 211 / 8e-70 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10031713 [exp] 127 / 5e-37 AT5G62350 202 / 4e-66 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10004327 [exp] 124 / 2e-35 AT1G62760 164 / 8e-50 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10031711 [exp] 122 / 8e-35 AT5G62360 145 / 4e-44 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10038914 [exp] 118 / 2e-33 AT5G62350 192 / 1e-62 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G128200 [exp] 170 / 1e-53 AT5G62360 172 / 1e-54 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.015G128300 [exp] 164 / 2e-51 AT5G62360 192 / 1e-62 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.015G128100 [exp] 159 / 2e-49 AT5G62360 221 / 1e-73 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.003G113600 [exp] 127 / 5e-37 AT1G62760 171 / 1e-52 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.012G127500 [exp] 126 / 1e-36 AT5G62350 220 / 2e-73 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.015G128700 [exp] 123 / 2e-35 AT5G62350 221 / 7e-74 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.001G119300 [exp] 120 / 4e-34 AT1G62760 167 / 3e-51 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.012G127400 [exp] 115 / 2e-32 AT4G25250 150 / 7e-46 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.003G113700 [exp] 113 / 3e-31 AT4G12390 178 / 1e-56 pectin methylesterase inhibitor 1 (.1) Potri.015G128400 [exp] 110 / 4e-30 AT5G62360 134 / 2e-39 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04043 [flax] [poplar] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Lus10038915 pacid=23150598 polypeptide=Lus10038915 locus=Lus10038915.g ID=Lus10038915.BGIv1.0 annot-version=v1.0 ATGGCATCAACTTCCTCCTCCTCAGCCGCCGCCGCCGCATTCCTCACGATCCTACTAATCTCCTCCACCACCACCGTCACCTCATCCCGCGCCGCCACCA CAAACACCGAGTTCATCCGGACATCATGCACGGCCACAACCTACCCAAAGCTCTGCTACGCCTCCCTATCAACCCAAGCCGCCAAAATCCAGTCAAGCTC CAAACTCCTCGCCGCCGCCGCCCTAGACGTCACCCTCACCTCCGTGAAATTCGCGTCCGCCGCCATGTCCAAGCTGTCACATGACCAAGGCCTCCTTCCA CGTGAGTCTGCCGCCATGAAGGACTGCGTGGAGGAGATGGGCGACTCCGTCGACCAGCTCCGCCGCTCCATCGACGAGTTCGAATCCACGACGACGAAGC CTGCCGATGTAGAGATGATGATCAGCGACGTGCAGACGTGGGTCAGCGCGGCGTTGACCGACGAGGGCACGTGCATGGACGGGTTTTCGATTTCCGGTAA GGCGGCGTCGGCGGTGAAGGAGGTTGTGAGAGGGAAGGTGGAGAAGATTGTTCATCTTACTAGTAATGCTCTGGCTTTGGTTAATTGCTATGCTAATTCT CTTCGTAATTAG
AA sequence Show only first row Show all	>Lus10038915 pacid=23150598 polypeptide=Lus10038915 locus=Lus10038915.g ID=Lus10038915.BGIv1.0 annot-version=v1.0 MASTSSSSAAAAAFLTILLISSTTTVTSSRAATTNTEFIRTSCTATTYPKLCYASLSTQAAKIQSSSKLLAAAALDVTLTSVKFASAAMSKLSHDQGLLP RESAAMKDCVEEMGDSVDQLRRSIDEFESTTTKPADVEMMISDVQTWVSAALTDEGTCMDGFSISGKAASAVKEVVRGKVEKIVHLTSNALALVNCYANS LRN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G62360			Plant invertase/pectin methyle...		Lus10038915 [exp]	0	1
AT2G48150		ATGPX4	glutathione peroxidase 4 (.1)		Lus10042692 [exp]	2.0	0.9162
AT5G57670			Protein kinase superfamily pro...		Lus10015516 [exp]	2.2	0.8524
AT1G80760		NLM7, NIP6;1	NOD26-like intrinsic protein 6...		Lus10041674 [exp]	3.5	0.8537
AT5G05690		CBB3, DWF3, CYP...	DWARF 3, CYTOCHROME P450 90A1,...		Lus10014850 [exp]	3.7	0.8875
AT1G80760		NLM7, NIP6;1	NOD26-like intrinsic protein 6...		Lus10041675 [exp]	6.7	0.8245
AT2G40610		ATHEXPALPHA1.11...	expansin A8 (.1)		Lus10029038 [exp]	10.5	0.8330
AT1G67623			F-box family protein (.1)		Lus10038709 [exp]	12.0	0.7707
AT4G03140			NAD(P)-binding Rossmann-fold s...		Lus10005927 [exp]	13.3	0.8133
AT5G62360			Plant invertase/pectin methyle...		Lus10027199 [exp]	18.3	0.7910
AT2G28085			SAUR-like auxin-responsive pro...		Lus10016129 [exp]	18.5	0.8190

Compare expression of checked genes

Lus10038915 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.