Plant FIBer expression Database

Lus10038916 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G51510 76 / 1e-17 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10027200
[exp]
151 / 6e-45 AT5G51510 127 / 2e-35 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.012G127100
[exp]
114 / 2e-32 AT5G51510 130 / 7e-39 unknown protein
PFAM info
Representative CDS sequence
>Lus10038916 pacid=23150535 polypeptide=Lus10038916 locus=Lus10038916.g ID=Lus10038916.BGIv1.0 annot-version=v1.0
ATGCAGCAGAGGAATCATGGGCGGCCATCAGGAACCGACGGCTCCGATTTCTCCTATCGCATGGTCGTCGATTCTCATCTTGATTTGCTTCATTTTTTTG
TTCAACGTTTCAGGCTATACGAAGGTCACGAATTTGAAGTCTCGCCTCCATGTCCTGATCTTAACTCAGGCGGTGATTCAGCTGGTGGGACTCGTGTCAT
TAGCTTTATCAATGTGGAGGGAGAAGGTGCTAGATCCGCTGGCCATTTCTTCTACTGCAACTGGGTTAATCGCTCTGCTGATTGGGGAAGTCGTAGGCGC
AGCAAATCTGGATGGTTGAGAATGTATATGATTGCGTCCTCCATCGGGTTGATTATCTCGCTATTCGCGAAGTTCAACAACAATTCTGCCTTCGAGGTGA
TGATGAACCCAAGTGACTGGAAAGCAAAGGAGTTCGAAGTTATCGAGATTTCGCTACTCTTAATCAGCTTGGTGGTGCAGATGGTTGCAGTCGGGACTGG
CATTTCTCTGGTTGGTAACATGTCTCCGCCAAAGAAAGCTTCTTGA
AA sequence
>Lus10038916 pacid=23150535 polypeptide=Lus10038916 locus=Lus10038916.g ID=Lus10038916.BGIv1.0 annot-version=v1.0
MQQRNHGRPSGTDGSDFSYRMVVDSHLDLLHFFVQRFRLYEGHEFEVSPPCPDLNSGGDSAGGTRVISFINVEGEGARSAGHFFYCNWVNRSADWGSRRR
SKSGWLRMYMIASSIGLIISLFAKFNNNSAFEVMMNPSDWKAKEFEVIEISLLLISLVVQMVAVGTGISLVGNMSPPKKAS

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G51510 unknown protein Lus10038916
[exp]
0 1
AT1G22450 ATCOX6B2, COX6B CYTOCHROME C OXIDASE 6B2, cyto... Lus10010345
[exp]
7.3 0.7794
AT2G21870 MGP1 MALE GAMETOPHYTE DEFECTIVE 1, ... Lus10005794
[exp]
16.2 0.7791
AT2G34520 RPS14 mitochondrial ribosomal protei... Lus10017877
[exp]
28.8 0.7496
AT2G44620 MTACP1, MTACP-1 mitochondrial acyl carrier pro... Lus10019500
[exp]
31.0 0.7163
AT3G25220 FKBP15-1 FK506-binding protein 15 kD-1 ... Lus10002339
[exp]
35.5 0.7260
AT2G31260 ATAPG9, APG9 autophagy 9 (APG9) (.1) Lus10000709
[exp]
40.1 0.7100
AT5G47890 NADH-ubiquinone oxidoreductase... Lus10040122
[exp]
63.0 0.7285
AT4G25400 bHLH bHLH118 basic helix-loop-helix (bHLH) ... Lus10027396
[exp]
63.8 0.6988
AT1G66590 ATCOX19-1 A. THALIANA CYTOCHROME C OXIDA... Lus10025812
[exp]
93.8 0.6937
AT3G53740 Ribosomal protein L36e family ... Lus10016501
[exp]
94.7 0.7057

Lus10038916 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.