Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45220 608 / 0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT5G51490 504 / 7e-175 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G47400 503 / 8e-174 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT5G51500 491 / 8e-170 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT4G00190 443 / 5e-152 PME38, ATPME38 A. THALIANA PECTIN METHYLESTERASE 38, pectin methylesterase 38 (.1) AT3G14310 436 / 2e-147 ATPME3 pectin methylesterase 3 (.1) AT1G23200 434 / 3e-147 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT1G53830 431 / 2e-145 ATPME2 pectin methylesterase 2 (.1) AT1G11580 426 / 5e-144 ATPMEPCRA methylesterase PCR A (.1) AT5G53370 424 / 5e-143 ATPMEPCRF pectin methylesterase PCR fragment F (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027202 [exp] 931 / 0 AT2G45220 620 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10006103 [exp] 791 / 0 AT2G45220 592 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10027206 [exp] 675 / 0 AT2G45220 551 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10031140 [exp] 475 / 3e-163 AT5G51500 587 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10031719 [exp] 474 / 5e-163 AT5G51500 570 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10009110 [exp] 467 / 2e-160 AT1G23200 501 / 1e-173 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10039314 [exp] 463 / 1e-158 AT3G14310 702 / 0.0 pectin methylesterase 3 (.1) Lus10031720 [exp] 456 / 9e-156 AT5G51490 546 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10027203 [exp] 454 / 4e-155 AT5G51490 556 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G126800 [exp] 684 / 0 AT2G45220 637 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.015G127700 [exp] 684 / 0 AT2G45220 680 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.002G145500 [exp] 616 / 0 AT2G45220 670 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.014G067100 [exp] 612 / 0 AT2G45220 691 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.015G127500 [exp] 557 / 0 AT2G45220 573 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.010G109400 [exp] 545 / 0 AT1G23200 579 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.015G127800 [exp] 517 / 3e-180 AT3G47400 649 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.012G126900 [exp] 494 / 5e-171 AT3G47400 640 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.003G072800 [exp] 469 / 3e-160 AT3G14310 795 / 0.0 pectin methylesterase 3 (.1) Potri.002G202500 [exp] 463 / 1e-158 AT4G02320 576 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF01095 [flax] [poplar] Pectinesterase Pectinesterase CL0268 [flax] [poplar] PF04043 [flax] [poplar] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Lus10038917 pacid=23150632 polypeptide=Lus10038917 locus=Lus10038917.g ID=Lus10038917.BGIv1.0 annot-version=v1.0 ATGGCTTCATCAGCTCTATTTCTCTTGATCTCCTTCTTCTTCTCGATTTCGTCGCTTTTCGCCGTTTCCCTCTCCTCGGAACCCGCCCACCACGACCTGA AATGGTGGTGCGACCAGACTCCGCATCCCGACACATGCCACCACTTCCTGACTGCAGACAACAACCCACAGTTCACCACAACCTCCCTCTCCTCCTCCTC CTTGATTTCGCGACCGGCGTTTCGCAAAACGGCAATCAGGCTAGCCATGGGTCGCGCCGAGACTGCTCAGGCCCACAACTACAGATTAGGCCCAAAGTGT CGTAGCAAGAAGGAAAGGGCAGCGTGGGCTGACTGTCTGAATCTCTATAATGACCTTGTCTCTCACTTGAATACAACCCTCACAGACACTAGATGCACAG ACTTCGACTCCCAGACATGGCTCAGTACCGCGCTGACAGACCTCGAGACTTGTCGGACCGGGTTTTCGGAGCTCGGGTTGTCCGGTTCGCCCGTCCTTCC CAACAACTACAACAACGTTTCTAAGCTTCTTAGCAATGCCCTTGCTTTGTCGAGTAATAATGCCACAAGTTTTGTTGCCACCTCATCAGTTGACTCAGAC GGGTTTCCAAGCTGGGTGAGCACCGGTAACCGGAGGCTGCTACAGTCAGGCGGTTCAATACCAACAGCGAATATCGTGGTGGCGCAAGATGGATCGGGGG ACTTTAGGACGGTGAAGGAAGCGATTGCAACCGCAGGGCAAAGGCAAAAGAGTGATAGTAGGTTTGTGATAAGGATTAAGAGTGGGGTTTACGAGGAGAA CGTCGAGATTGGAAAGAAACTGAAGAACATAATGTTGGTCGGAGATGGTATGAAGAGTACGATAATCACCGGTAGCCGGAGCGTGGTCGGAGGGTCTACT ACTTTCAACTCCGCAACCGTTGTGGTGACCGGCGACGGATTCATCGCCCGAGACATCACCTTCCGGAACACCGCTGGCGCCAAAAACCACCAGGCGGTAG CCCTCCGGTCAGGCGCCGACCTCTCGGTCTTCTACAAATGCGGCTTCGAAGGCTACCAGGACACGCTCTACGTGCACTCCAACCGCCAGTTCTACCGCGA GTGCGACATCTACGGTACGGTGGATTTTATCTTCGGTAACGCTGCCGCAGTCCTCCAGAACTGTAATATCTTCGCCCGCCGGCCGATGGACAATCAGAAG ATCACCATCACCGCACAGGGCCGAACCGACCCGAACCAGAACACGGGGATTTCGATCCACAACTCGCGGGTCGTGGCCGGTTCGGACCTCAAACCGGTTC TCGGTTCGTTCAAGACTTTCTTGGGCCGGCCGTGGCAGGCGTACTCGAGGACGGTGTTCATGCAGACTTTCCTCGACTCGCTGGTTGACCCGGCCGGTTG GTTGGAGTGGAGCGGTAATTTCGCGCTGAACACACTGTATTACGGTGAGTATAAGAATACTGGTCCTGGAGCTCCGACGGGTGGGCGAATAAAGTGGGCC GGGTACCGGGTTATTACGAGCGCGACTGAAGCGGGCCGTTTTAGTGTGGGGAATTTTATTGCTGGAGGGTCTTGGATTTCGGGAACAGGGATTCCGTTCA CATCTGGGCTTTAG
AA sequence Show only first row Show all	>Lus10038917 pacid=23150632 polypeptide=Lus10038917 locus=Lus10038917.g ID=Lus10038917.BGIv1.0 annot-version=v1.0 MASSALFLLISFFFSISSLFAVSLSSEPAHHDLKWWCDQTPHPDTCHHFLTADNNPQFTTTSLSSSSLISRPAFRKTAIRLAMGRAETAQAHNYRLGPKC RSKKERAAWADCLNLYNDLVSHLNTTLTDTRCTDFDSQTWLSTALTDLETCRTGFSELGLSGSPVLPNNYNNVSKLLSNALALSSNNATSFVATSSVDSD GFPSWVSTGNRRLLQSGGSIPTANIVVAQDGSGDFRTVKEAIATAGQRQKSDSRFVIRIKSGVYEENVEIGKKLKNIMLVGDGMKSTIITGSRSVVGGST TFNSATVVVTGDGFIARDITFRNTAGAKNHQAVALRSGADLSVFYKCGFEGYQDTLYVHSNRQFYRECDIYGTVDFIFGNAAAVLQNCNIFARRPMDNQK ITITAQGRTDPNQNTGISIHNSRVVAGSDLKPVLGSFKTFLGRPWQAYSRTVFMQTFLDSLVDPAGWLEWSGNFALNTLYYGEYKNTGPGAPTGGRIKWA GYRVITSATEAGRFSVGNFIAGGSWISGTGIPFTSGL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45220			Plant invertase/pectin methyle...		Lus10038917 [exp]	0	1
AT2G45220			Plant invertase/pectin methyle...		Lus10027202 [exp]	1.4	0.9869
AT2G35980		NHL10, YLS9, AT...	YELLOW-LEAF-SPECIFIC GENE 9, A...		Lus10016962 [exp]	2.6	0.9892
AT5G39150			RmlC-like cupins superfamily p...		Lus10006536 [exp]	5.9	0.9836
AT1G14590			Nucleotide-diphospho-sugar tra...		Lus10017981 [exp]	6.2	0.9849
AT5G39120			RmlC-like cupins superfamily p...		Lus10006538 [exp]	6.5	0.9815
AT2G02010		GAD4	glutamate decarboxylase 4 (.1)		Lus10034426 [exp]	7.2	0.9836
AT3G59710			NAD(P)-binding Rossmann-fold s...		Lus10035736 [exp]	7.9	0.9809
AT5G17330		GAD1, GAD	GLUTAMATE DECARBOXYLASE 1, glu...		Lus10034425 [exp]	11.2	0.9800
AT1G70420			Protein of unknown function (D...		Lus10030612 [exp]	11.4	0.9791
AT4G34350		HDR, CLB6, ISPH	CHLOROPLAST BIOGENESIS 6, 4-hy...		Lus10011310 [exp]	11.6	0.9773

Compare expression of checked genes

Lus10038917 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.