Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51490 506 / 1e-176 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G47400 491 / 1e-169 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT5G51500 484 / 8e-168 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT2G45220 421 / 2e-143 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT4G00190 352 / 7e-117 PME38, ATPME38 A. THALIANA PECTIN METHYLESTERASE 38, pectin methylesterase 38 (.1) AT1G11580 327 / 3e-106 ATPMEPCRA methylesterase PCR A (.1) AT3G49220 326 / 3e-105 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT1G23200 324 / 4e-105 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G14310 324 / 1e-104 ATPME3 pectin methylesterase 3 (.1) AT3G60730 318 / 4e-103 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027204 [exp] 801 / 0 AT5G51490 560 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10027203 [exp] 763 / 0 AT5G51490 556 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10031720 [exp] 659 / 0 AT5G51490 546 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10031141 [exp] 634 / 0 AT5G51490 523 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10031140 [exp] 564 / 0 AT5G51500 587 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10031719 [exp] 550 / 0 AT5G51500 570 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10006103 [exp] 433 / 8e-149 AT2G45220 592 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10038917 [exp] 433 / 9e-148 AT2G45220 630 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10038919 [exp] 418 / 1e-140 AT5G51490 462 / 6e-157 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G127800 [exp] 537 / 0 AT3G47400 649 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.012G126900 [exp] 523 / 0 AT3G47400 640 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.015G127700 [exp] 470 / 2e-162 AT2G45220 680 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.012G126800 [exp] 454 / 3e-156 AT2G45220 637 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.002G145500 [exp] 425 / 5e-145 AT2G45220 670 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.014G067100 [exp] 420 / 4e-143 AT2G45220 691 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.010G109400 [exp] 398 / 3e-134 AT1G23200 579 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.015G127500 [exp] 394 / 1e-132 AT2G45220 573 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.003G072800 [exp] 342 / 6e-112 AT3G14310 795 / 0.0 pectin methylesterase 3 (.1) Potri.002G202500 [exp] 337 / 3e-110 AT4G02320 576 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF01095 [flax] [poplar] Pectinesterase Pectinesterase CL0268 [flax] [poplar] PF04043 [flax] [poplar] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Lus10038918 pacid=23150672 polypeptide=Lus10038918 locus=Lus10038918.g ID=Lus10038918.BGIv1.0 annot-version=v1.0 ATGGTTATTGAAACGGCGTTGAGCAGAGCGCTCGACGTGGAAGGTCAACTCGTAAACCTCACTTCAAAGTGTAGGAACCCAAGACAGTCAACGGTGTGGA GCGACTGCAGGAAGCTTCACACCAACACCATCCGCCACCTCAACAACACGCTCCAGTGCCTCCACGGCAGGGTCGTCGACCCTGCCATGGAGATCATGTG CTCTGACTTGGATGCCCAGACGTGGCTAAGCAGCGCCCTGACCAACGTGGAAACATGTCGGTCAGGGTCAGCAGATCTGAATGTGTCGGACTTCATCTCC CCGATGATCGAGTCTAGCAACCTGTCGCAGCTGATCACCAATACGTTAGCGGTCAACGGGGCATTACTTACCAATAACGAGGCGAACGAAAAGTTCAACT CAGCAAACCATATCCACGTGTCCTCAGCAAATTGGGGCTTGGACGAGAAGCGGAAAGTTCTGGAAGGTTCCATCGCCTCGTTACATTTAAAGGCGAGTGT CGTGGTGGCAAAGGACGGTTCAGGGAAGTTCAAGACGGTTCAGTCGGCGATTGATTGGGCGGCTAAGAGGCACAACTTCAAGGAGAAGTTTATCATACGA GTCAAAAGAGGTGTTTACAAGGAGAACATTGAGGTTTTGGATAGTAATCACCACGTTTGGCTCGTCGGAGATGGGATCGGAGTTACTATCATCACCGGCG GCCGTAGCGTCGGGAGTGGATCCTACACCACGTTCAGTTCTGCCACCGCGGGGATCGATGGGGCCCGCTTCGTAGCTCGTGGGATCACGTTTCGAAACAC AGCCGGCCCCGCAGGCTGGCAAGCGGTGGCCGTCCGGTCAGGCTCCGACCTCGCCGTCTTCTACCGTTGCAGCTTCGAAGCCTACCAGGACACCCTATTC ATCCACTCCCAGCGACAGTTCTTCCGCGAGTGCCATGTATCCGGCACGGTGGACTTTATCTTCGGCAATGCCGCCGCAGTGTTCCAGAACTGCCTCATCT TCGTCCGCCGCCCGATGAGCAACCAGTCCAACTACATCACCGAGCAAGGGAGGCTCAACCCGTTCGAGCGCACCGGAATCTCGATCCACAACTCCAAGAT AATGCCGGCGCCGGAGCTCAAACCCGTGGTCCGGAAATTCCGGACGTACTTGGGACGGCCGTGGATGAAGTTTTCGAGGACCGTCGTTATGAAGAGCTAT CTGGACAGAATGATCACGCCCTCCGGTTGGTCCAGGTGGAACAACCGGAGTTTTGCTCTGAGTACTTTGTACTACGCAGAGTTCAAGAATTATGGTCCCG GAGCTTCGACCAAGTCTAGGGTGAAATGGAAAGGATTTCGGGTCATTCGAGATAGTGAAACGGCGAAACGTTTCACCGTCGACGGACTTTATGTTGACCG GTCTTGGTTGTCGTCCACCGGAGTTCCCTTTGTCGCTGGCCTTTAG
AA sequence Show only first row Show all	>Lus10038918 pacid=23150672 polypeptide=Lus10038918 locus=Lus10038918.g ID=Lus10038918.BGIv1.0 annot-version=v1.0 MVIETALSRALDVEGQLVNLTSKCRNPRQSTVWSDCRKLHTNTIRHLNNTLQCLHGRVVDPAMEIMCSDLDAQTWLSSALTNVETCRSGSADLNVSDFIS PMIESSNLSQLITNTLAVNGALLTNNEANEKFNSANHIHVSSANWGLDEKRKVLEGSIASLHLKASVVVAKDGSGKFKTVQSAIDWAAKRHNFKEKFIIR VKRGVYKENIEVLDSNHHVWLVGDGIGVTIITGGRSVGSGSYTTFSSATAGIDGARFVARGITFRNTAGPAGWQAVAVRSGSDLAVFYRCSFEAYQDTLF IHSQRQFFRECHVSGTVDFIFGNAAAVFQNCLIFVRRPMSNQSNYITEQGRLNPFERTGISIHNSKIMPAPELKPVVRKFRTYLGRPWMKFSRTVVMKSY LDRMITPSGWSRWNNRSFALSTLYYAEFKNYGPGASTKSRVKWKGFRVIRDSETAKRFTVDGLYVDRSWLSSTGVPFVAGL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G51490			Plant invertase/pectin methyle...		Lus10038918 [exp]	0	1

Compare expression of checked genes

Lus10038918 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.