Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51490 462 / 4e-157 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT5G51500 459 / 1e-155 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G47400 456 / 8e-154 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT2G45220 367 / 3e-120 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT4G02330 358 / 4e-116 AtPME41, ATPMEPCRB pectin methylesterase 41, Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G60730 348 / 4e-113 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT2G47550 338 / 1e-108 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT1G02810 338 / 3e-108 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT1G11580 332 / 2e-106 ATPMEPCRA methylesterase PCR A (.1) AT3G43270 330 / 7e-106 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031140 [exp] 529 / 0 AT5G51500 587 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10031719 [exp] 516 / 4e-178 AT5G51500 570 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10031141 [exp] 472 / 1e-160 AT5G51490 523 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10038918 [exp] 444 / 7e-151 AT5G51490 535 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10027204 [exp] 441 / 9e-147 AT5G51490 560 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10031720 [exp] 424 / 4e-142 AT5G51490 546 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10027203 [exp] 424 / 9e-142 AT5G51490 556 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10006103 [exp] 385 / 6e-128 AT2G45220 592 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10027206 [exp] 382 / 3e-126 AT2G45220 551 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G127800 [exp] 480 / 4e-164 AT3G47400 649 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.012G126900 [exp] 475 / 3e-162 AT3G47400 640 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.015G127700 [exp] 409 / 2e-136 AT2G45220 680 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.012G126800 [exp] 397 / 9e-132 AT2G45220 637 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.010G109400 [exp] 367 / 4e-120 AT1G23200 579 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.014G067100 [exp] 362 / 2e-118 AT2G45220 691 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.002G145500 [exp] 361 / 6e-118 AT2G45220 670 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.015G127500 [exp] 357 / 3e-116 AT2G45220 573 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.003G072800 [exp] 348 / 3e-112 AT3G14310 795 / 0.0 pectin methylesterase 3 (.1) Potri.011G025400 [exp] 346 / 8e-112 AT1G11580 638 / 0.0 methylesterase PCR A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF01095 [flax] [poplar] Pectinesterase Pectinesterase CL0268 [flax] [poplar] PF04043 [flax] [poplar] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Lus10038919 pacid=23150630 polypeptide=Lus10038919 locus=Lus10038919.g ID=Lus10038919.BGIv1.0 annot-version=v1.0 ATGGCTTCTACTAGGCCATTGATGAGCATTTCCCTATTGATCTTCTTCTCTTCATTCCTTGTTTCTATCTATGCCTCGCTCGGGCACGATGATAGGGTCA GTGCTAATCACTCGTCCATAAACATGTGGTGCAACAACACCCCATACCCGGACACATGTAACTACTACCTGGGCCAGATCAATTGGCCACATGGTAAGCA CCCCTCGATCAAGAAGTCGCAGTTCCGGGTGATGCTCATCGCGGCGACACTCAAGAGGGCTGTCGAGGCGGAGCAGAAAGTGCACGGTTGGCGGTCGAAG GCCAAGGACCACGCGCAGCGCGCCACGTGGGTTGATTGCGTCCGGCTCCACTCGAGCACGATTCGCCGGCTGAACAGGACCCTGGACGGACTGAGGTCCG CCCCGAAGTCCTGCACTAACCTAGATGCCCAGACGTGGCTCAGCAGCTCGCTGACCAATCTGGAGACCTGCCTAACTGGCTCGGGCGACCTCAACGTGTC GTCCGAGTTCGTCAAGCCCATGATGTCGGGGAACCTGACGAAGCTCATCAGCGCTTCGCTGGCGGTGAATGGCGGTTTCCTTCCGCCGCAAGAAAGGAGG AGAATACTAATCGGAGAAGAAGAAGACGACGAATTAACCGGTTCATTTCCTAAGTGGTTCGGGAGTCACGAGCGGCGGGTGTTGCAACAAGTGCCTGTCG GGGCGAGTAGCTTAAGGGCGAATGTGGTGGTGGCGCTCGACGGTTCAGGTCATTTTCGGTCAGTTCAGCAGGCGATTAACTTCGCAAAGAGGAGGAGGTA TAAGACTCGATTTATTATAAGAGTGAAGCGAGGGGTTTATAGAGAAAATATTGAGGTTGATAACGACAACGGCTACATTTGGCTCATTGGCGATGGATCT CGATACACTATCATTACCAGCGGTCGCAGCGTCGGTGGTGGGGCGAATGTGTTGGTGGCGCTCGACGGTTCAGGTCATTTTCGGTCAGTTCAGCAGGCGA TTAACTTCGCAAAGAGGAGGAGGTATAAGACTCGATTTATTATAAGAGTGAAGCGAGGGGTTTATAGAGAAAATATTGAGGTTGATAACGACAACGGCTA CATTTGGCTCATTGGCGATGGATCTCGATACACTATCATTACCAGCGGTCGCAGCGTCGGTGGTGGATACACCACGTTCAGCTCAGCAACCGTCGGAATC GACGGCCCACGATTTGTGGCACGTGGAATAACATTCCGAAACACCGCGGGCCCTCTAAAGGGCCAAGCAGTAGCCCTCCGGTCAATGTCCGACCTTTCGG TCTTCTACCAATGCTCGATTGAGGGCTACCAGGACACATTATTCATCCACTCCCAGCGCCAATTCTATCGCGATTGCTACATCTCCGGGACGATCGACTT CATATTCGGCAACGCTGCTGCCGTCTTTCAGAACTGCGTAATCTCCCCACGCAGGCCGCTCCACGGCCAGGCGAACATGATCACCGCCCAGGGGCGGAAT GACCCGTTCCAGAACACGGGGATTTCGATACACAACTCGAAGATTGTCCCCGCCCCAGACCTTCGGCCGGTGGTTAGGACAGTGAAGACGTATCTCGGCC GTCCGTGGATGCAGTACGCACGGACGGTCGTGATGCGGAGCTATATGGACCGGTTCATCTACCCGAAAGGGTGGTCCGAGTGGCGGGAGAATTCAAATGT CGGGATTAAGACGTTGTACTTTGGGGAGTATAAGAATTTCGGGGCTGGGGCTTCGACCCGGTGGCGGGTCCGGTGGCCCGGGTTTCACGCAATGAAGTCG GCCCGCGAGGCGTCGAGGTTTAGTGTTGATGGGCTTATTGCTGGGCGGGCTTGGTTGCCGCCCACTGGGGTTCCGTATACTGCTGGCATTTGA
AA sequence Show only first row Show all	>Lus10038919 pacid=23150630 polypeptide=Lus10038919 locus=Lus10038919.g ID=Lus10038919.BGIv1.0 annot-version=v1.0 MASTRPLMSISLLIFFSSFLVSIYASLGHDDRVSANHSSINMWCNNTPYPDTCNYYLGQINWPHGKHPSIKKSQFRVMLIAATLKRAVEAEQKVHGWRSK AKDHAQRATWVDCVRLHSSTIRRLNRTLDGLRSAPKSCTNLDAQTWLSSSLTNLETCLTGSGDLNVSSEFVKPMMSGNLTKLISASLAVNGGFLPPQERR RILIGEEEDDELTGSFPKWFGSHERRVLQQVPVGASSLRANVVVALDGSGHFRSVQQAINFAKRRRYKTRFIIRVKRGVYRENIEVDNDNGYIWLIGDGS RYTIITSGRSVGGGANVLVALDGSGHFRSVQQAINFAKRRRYKTRFIIRVKRGVYRENIEVDNDNGYIWLIGDGSRYTIITSGRSVGGGYTTFSSATVGI DGPRFVARGITFRNTAGPLKGQAVALRSMSDLSVFYQCSIEGYQDTLFIHSQRQFYRDCYISGTIDFIFGNAAAVFQNCVISPRRPLHGQANMITAQGRN DPFQNTGISIHNSKIVPAPDLRPVVRTVKTYLGRPWMQYARTVVMRSYMDRFIYPKGWSEWRENSNVGIKTLYFGEYKNFGAGASTRWRVRWPGFHAMKS AREASRFSVDGLIAGRAWLPPTGVPYTAGI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G51490			Plant invertase/pectin methyle...		Lus10038919 [exp]	0	1
AT2G43870			Pectin lyase-like superfamily ...		Lus10022530 [exp]	2.0	0.9851
AT2G23630		SKS16	SKU5 similar 16 (.1)		Lus10000837 [exp]	2.2	0.9717
AT5G63180			Pectin lyase-like superfamily ...		Lus10036946 [exp]	3.5	0.9712
AT4G37160		SKS15	SKU5 similar 15 (.1)		Lus10019642 [exp]	3.5	0.9798
AT5G54370			Late embryogenesis abundant (L...		Lus10037886 [exp]	4.9	0.9766
AT5G60520			Late embryogenesis abundant (L...		Lus10031532 [exp]	6.6	0.9720
AT5G60520			Late embryogenesis abundant (L...		Lus10015148 [exp]	9.2	0.9617
AT5G51480		SKS2	SKU5 similar 2 (.1)		Lus10038920 [exp]	11.2	0.9601
AT5G10130			Pollen Ole e 1 allergen and ex...		Lus10041707 [exp]	11.5	0.9704
AT1G50720			Stigma-specific Stig1 family p...		Lus10043047 [exp]	11.8	0.9658

Compare expression of checked genes

Lus10038919 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.