Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51460 488 / 2e-172 ATTPPA Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.3) AT4G22590 438 / 9e-153 TPPG trehalose-6-phosphate phosphatase G, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT4G12430 413 / 3e-143 TPPF trehalose-6-phosphate phosphatase F, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT1G35910 362 / 4e-123 TPPD trehalose-6-phosphate phosphatase D, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT4G39770 356 / 4e-121 TPPH trehalose-6-phosphate phosphatase H, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT5G65140 348 / 2e-117 TPPJ trehalose-6-phosphate phosphatase J, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) AT2G22190 346 / 5e-117 TPPE trehalose-6-phosphate phosphatase E, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT1G78090 346 / 9e-117 ATTPPB Arabidopsis thaliana trehalose-6-phosphate phosphatase B, trehalose-6-phosphate phosphatase (.1) AT5G10100 343 / 3e-116 TPPI trehalose-6-phosphate phosphatase I, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) AT1G22210 321 / 1e-107 TPPC trehalose-6-phosphate phosphatase C, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027208 [exp] 716 / 0 AT5G51460 515 / 0.0 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.3) Lus10031723 [exp] 568 / 0 AT5G51460 511 / 0.0 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.3) Lus10031146 [exp] 560 / 0 AT5G51460 517 / 0.0 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.3) Lus10024607 [exp] 459 / 7e-161 AT4G22590 534 / 0.0 trehalose-6-phosphate phosphatase G, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10032244 [exp] 457 / 5e-160 AT4G22590 531 / 0.0 trehalose-6-phosphate phosphatase G, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10019666 [exp] 372 / 2e-127 AT5G65140 483 / 9e-173 trehalose-6-phosphate phosphatase J, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Lus10000687 [exp] 323 / 2e-107 AT5G65140 451 / 3e-159 trehalose-6-phosphate phosphatase J, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Lus10019010 [exp] 318 / 8e-106 AT1G78090 338 / 6e-115 Arabidopsis thaliana trehalose-6-phosphate phosphatase B, trehalose-6-phosphate phosphatase (.1) Lus10039339 [exp] 314 / 2e-104 AT1G78090 339 / 2e-115 Arabidopsis thaliana trehalose-6-phosphate phosphatase B, trehalose-6-phosphate phosphatase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G126100 [exp] 511 / 0 AT5G51460 526 / 0.0 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.3) Potri.015G126900 [exp] 505 / 5e-179 AT5G51460 531 / 0.0 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.3) Potri.001G120500 [exp] 455 / 2e-159 AT4G22590 501 / 2e-178 trehalose-6-phosphate phosphatase G, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.003G112400 [exp] 436 / 8e-152 AT4G12430 485 / 3e-172 trehalose-6-phosphate phosphatase F, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.007G090900 [exp] 365 / 5e-124 AT5G65140 548 / 0.0 trehalose-6-phosphate phosphatase J, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Potri.002G094500 [exp] 363 / 1e-123 AT5G65140 489 / 3e-174 trehalose-6-phosphate phosphatase J, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Potri.005G077200 [exp] 362 / 9e-123 AT5G65140 545 / 0.0 trehalose-6-phosphate phosphatase J, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Potri.012G001000 [exp] 332 / 1e-111 AT1G35910 336 / 4e-114 trehalose-6-phosphate phosphatase D, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.015G020300 [exp] 317 / 2e-105 AT1G78090 333 / 4e-113 Arabidopsis thaliana trehalose-6-phosphate phosphatase B, trehalose-6-phosphate phosphatase (.1) Potri.005G166700 [exp] 260 / 2e-84 AT5G65140 362 / 8e-126 trehalose-6-phosphate phosphatase J, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [flax] [poplar] HAD PF02358 [flax] [poplar] Trehalose_PPase Trehalose-phosphatase
Representative CDS sequence Show only first row Show all	>Lus10038921 pacid=23150475 polypeptide=Lus10038921 locus=Lus10038921.g ID=Lus10038921.BGIv1.0 annot-version=v1.0 ATGGACTTCAAATCCAACCACACTGCTCCTGTTCTCACCGATTCCGCACCCATACCCAATTCAAGATTGCATTCTCCTTTGCTAACATGCACAACCTCTG GAGCTACATTCTCCACAAACCTGTTACTAACTGTCCCGAGGAAGAAAGCTGGATTACTGGATGATGTACGCACCAGCAGCTGGCTAGATGCAATGAAAGC ATCTTCTCCTCCTCCTAGGAGGCTAACGAAAGACCAGAACAATTTCTCACCTGATGATAGTGGCTACTCTAACTGGCTGGGTAATTATCCATCAGCTCTT GTATCTTTTGATCAGATTGCGAAAGTCGCAAGTGGCAAAAGGATAGCTCTGTTCCTGGACTACGACGGGACTCTTTCGCCCATCGTTGACAACCCTGACT GTGCCTTCATGTCGAACGAGATGCGATCTGCTGTAAAACAGGTCGCTGAATGCTTCCCAACCGCAATAATCAGCGGAAGAAGTCGCGACAAGGTGTACGA GTTTGTGGGTCTAACTGAACTGTACTACGCCGGTAGCCACGGGATGGACATAATGAGTCCTCCCGTTAGAGATTCCGTAACTGCTGACAAGGAAGTCAAC CTTTTCCAGCCAGCCAGCGAGTTCTTACCCATGATCGACGAGGTTTTTAATTCCCTTGTGGAGATCACTGGAGGTATCAAAGGCGCCAAAGTTGAAAACA ACAAGTTCTGCGTCTCCGTACATTACCGCAACGTAGATGACAAGTATTGGGACGTAGTGGCACAATCTGTACGGAAAGTGATTGAAAACAATCAACGGCT ACGGTTGACCCACGGTAGAAAGGTTCTAGAGGTTCGACCGGTTATCGACTGGGATAAGGGTAAAGCCGTCACATTTCTGCTCGAATCACTCGGCTTGACT AATTGTGACGATGTCCTTCCAATTTACGTTGGTGACGACCGGACTGATGAGGATGCATTCAAGGTGTTGCGAGAGAGGAATTGCGGGTATGGGATATTGG TGTCGTCTGTGCCCAAGGAGAGCAATGCTTATTACTCCCTTAGAGATCCATCGGAGTTTCGATTTGAATCCTTTCATGATGTGATGTGTGAATTTGGATC AGGTGATGGAGTTCCTGAAGTCGCTGGTGATGTGGAAGCAAGCAAAGTGCTTCGTCGATACGAAAAAGGACTGAACAACGCGAGAAGTGGTGATTTGATT TGTGTGTTAAGTATAGAAAGTAGAATAGCCGGCTTACGTTATACACTGTGGTATGGCGGTGGAGGAGGAGGAGGAAGACGTTATGTTGTGTATGGTTTGA GCAGTCAGTTTTGTGGGAGCGGCTAG
AA sequence Show only first row Show all	>Lus10038921 pacid=23150475 polypeptide=Lus10038921 locus=Lus10038921.g ID=Lus10038921.BGIv1.0 annot-version=v1.0 MDFKSNHTAPVLTDSAPIPNSRLHSPLLTCTTSGATFSTNLLLTVPRKKAGLLDDVRTSSWLDAMKASSPPPRRLTKDQNNFSPDDSGYSNWLGNYPSAL VSFDQIAKVASGKRIALFLDYDGTLSPIVDNPDCAFMSNEMRSAVKQVAECFPTAIISGRSRDKVYEFVGLTELYYAGSHGMDIMSPPVRDSVTADKEVN LFQPASEFLPMIDEVFNSLVEITGGIKGAKVENNKFCVSVHYRNVDDKYWDVVAQSVRKVIENNQRLRLTHGRKVLEVRPVIDWDKGKAVTFLLESLGLT NCDDVLPIYVGDDRTDEDAFKVLRERNCGYGILVSSVPKESNAYYSLRDPSEFRFESFHDVMCEFGSGDGVPEVAGDVEASKVLRRYEKGLNNARSGDLI CVLSIESRIAGLRYTLWYGGGGGGGRRYVVYGLSSQFCGSG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G51460		ATTPPA	Haloacid dehalogenase-like hyd...		Lus10038921 [exp]	0	1
AT5G37790			Protein kinase superfamily pro...		Lus10017631 [exp]	2.2	0.8377
AT1G54570			Esterase/lipase/thioesterase f...		Lus10018998 [exp]	4.2	0.8361
AT5G40270			HD domain-containing metal-dep...		Lus10013004 [exp]	7.7	0.7814
AT3G01510		LSF1	like SEX4 1 (.1)		Lus10008779 [exp]	9.5	0.8179
AT4G03415			Protein phosphatase 2C family ...		Lus10039802 [exp]	15.0	0.7946
AT1G04500			CCT motif family protein (.1)		Lus10023727 [exp]	16.7	0.7871
AT4G39210		APL3	Glucose-1-phosphate adenylyltr...		Lus10040437 [exp]	20.2	0.7581
AT5G56270	WRKY	ATWRKY2, WRKY2,...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10020215 [exp]	20.8	0.7901
AT3G23940			dehydratase family (.1.2)		Lus10043132 [exp]	22.1	0.7721
AT3G01720			unknown protein		Lus10022320 [exp]	22.9	0.7715

Compare expression of checked genes

Lus10038921 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.