Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47420 556 / 0 AtG3Pp1, ATPS3 Glycerol-3-phosphate permease 1, phosphate starvation-induced gene 3 (.1) AT4G25220 465 / 5e-162 AtG3Pp2, RHS15 glycerol-3-phosphate permease 2, root hair specific 15 (.1) AT1G30560 460 / 3e-160 AtG3Pp3 glycerol-3-phosphate permease 3, Major facilitator superfamily protein (.1) AT4G17550 448 / 6e-155 AtG3Pp4 glycerol-3-phosphate permease 4, Major facilitator superfamily protein (.1) AT2G13100 426 / 8e-147 AtG3Pp5 glycerol-3-phosphate permease 5, Major facilitator superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027210 [exp] 618 / 0 AT3G47420 705 / 0.0 Glycerol-3-phosphate permease 1, phosphate starvation-induced gene 3 (.1) Lus10031153 [exp] 562 / 0 AT3G47420 695 / 0.0 Glycerol-3-phosphate permease 1, phosphate starvation-induced gene 3 (.1) Lus10027211 [exp] 522 / 0 AT3G47420 454 / 9e-159 Glycerol-3-phosphate permease 1, phosphate starvation-induced gene 3 (.1) Lus10040154 [exp] 470 / 9e-164 AT4G17550 734 / 0.0 glycerol-3-phosphate permease 4, Major facilitator superfamily protein (.1) Lus10004358 [exp] 469 / 6e-163 AT4G17550 725 / 0.0 glycerol-3-phosphate permease 4, Major facilitator superfamily protein (.1) Lus10040002 [exp] 398 / 8e-136 AT2G13100 708 / 0.0 glycerol-3-phosphate permease 5, Major facilitator superfamily protein (.1.2.3) Lus10031729 [exp] 161 / 8e-49 AT3G47420 155 / 2e-46 Glycerol-3-phosphate permease 1, phosphate starvation-induced gene 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G124200 [exp] 555 / 0 AT3G47420 711 / 0.0 Glycerol-3-phosphate permease 1, phosphate starvation-induced gene 3 (.1) Potri.003G109300 [exp] 546 / 0 AT3G47420 694 / 0.0 Glycerol-3-phosphate permease 1, phosphate starvation-induced gene 3 (.1) Potri.001G152300 [exp] 447 / 2e-154 AT4G17550 692 / 0.0 glycerol-3-phosphate permease 4, Major facilitator superfamily protein (.1) Potri.018G115000 [exp] 427 / 3e-147 AT2G13100 699 / 0.0 glycerol-3-phosphate permease 5, Major facilitator superfamily protein (.1.2.3) Potri.003G082366 [exp] 397 / 4e-135 AT4G17550 624 / 0.0 glycerol-3-phosphate permease 4, Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF07690 [flax] [poplar] MFS_1 Major Facilitator Superfamily
Representative CDS sequence Show only first row Show all	>Lus10038923 pacid=23150330 polypeptide=Lus10038923 locus=Lus10038923.g ID=Lus10038923.BGIv1.0 annot-version=v1.0 ATGTTTTTCTCTGGGCATCTGGGCGACAGGATGAATTTAAGGCTGTTCTTAACGGTGGGGATGCTCGGGACGGGTGTTTTCACCGCCCTTTTCGGGGCCG GGTTCTGGCTGGATGTCCATAGCTTCTACTATTTCTTGGCAATGCAGATGGTTGCGGGGTTGTTCCAGTCGACCGGGTGGCCATCTGTGGTTGCGGTGGT GGGGAATTGGTGCGGGAAGACGAAGAGAGGGCTGATCATGGGGGTTTGGAATGCTCATACCTCGGTCGGGAACATTTCCGGGTCGTTGATTGCGGCCGCG ATGCTGAGGTATGGGTGGGGGTGGTCGTTTGTGGTCCCTGGCTTGGCGATCGGGGTGGTTGGTGTGGTTGTGTTCTTGTTCTTGGGGGTTAGCCCTTCGA GCGTCGGGGCTCGAGAGGATGAGGAGGAGGAAGACGAGGATGAGGGGAAGTTTGAGAAGAACGGCGAATTGAGGGAGCCATTGTTGTTGGGAGATGATGA GGTTGAAGAAGAGAAAGCTGTTGGGTTTATAGAAGCATGGAGGATTCCTGGTGTTGCTCCTTTTGCTTTGTGTCTCTTCTTTGCTAAGTTGGTTGCCTAC ACTTTCCTCTACTGGCTGCCATTCTACATCAGTCACACAGCAATCGACGGGAAGTACATCTCCGACGGAACAGCAGGCAACCTATCAACCCTTTTCGACG TGGGAGGCGTAGTGGGAGGGATCCTAGCGGGCCACATTTCCGACCGACTCAACGCCAGAGCGATCACCGCGGCGAGCTTCATGTACTGCGCCATCCCGGC CCTCTACCTCTACCGCAGCTATGGAGACGTGTCACTGACACTAAACATCATCTTGATGCTGCTAACGGGAATGTTCGTGAACGGCCCGTACGCCCTCATA ACGACCGCTGTCTCGGCCGACTTGGGAACACACAGCTCGTTGAAAGGGAACTCGAGAGCGCTGGCTACGGTGACAGCGATCATCGATGGAACTGGGTCAG TCGGTGCAGCGATAGGGCCGTTGCTGACCGGTTACATCTCGGCCACGAGCTGGAGTGCAGTGTTCACAATGCTGATGGGTTCGGCCTTCGTGGCCGGGTT GCTTTTGACTAGGCTTGTCGTTGCTGAGGTTACTGCTAAGATTGCTGAGTCTCAGCAGCAGGGGAATAGTGGTTGTGGTAGTTCTTCTCAAGTGGCTGAG CTTGATGTTTGA
AA sequence Show only first row Show all	>Lus10038923 pacid=23150330 polypeptide=Lus10038923 locus=Lus10038923.g ID=Lus10038923.BGIv1.0 annot-version=v1.0 MFFSGHLGDRMNLRLFLTVGMLGTGVFTALFGAGFWLDVHSFYYFLAMQMVAGLFQSTGWPSVVAVVGNWCGKTKRGLIMGVWNAHTSVGNISGSLIAAA MLRYGWGWSFVVPGLAIGVVGVVVFLFLGVSPSSVGAREDEEEEDEDEGKFEKNGELREPLLLGDDEVEEEKAVGFIEAWRIPGVAPFALCLFFAKLVAY TFLYWLPFYISHTAIDGKYISDGTAGNLSTLFDVGGVVGGILAGHISDRLNARAITAASFMYCAIPALYLYRSYGDVSLTLNIILMLLTGMFVNGPYALI TTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYISATSWSAVFTMLMGSAFVAGLLLTRLVVAEVTAKIAESQQQGNSGCGSSSQVAE LDV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G47420		AtG3Pp1, ATPS3	Glycerol-3-phosphate permease ...		Lus10038923 [exp]	0	1
AT3G47420		AtG3Pp1, ATPS3	Glycerol-3-phosphate permease ...		Lus10027211 [exp]	1.0	0.9399
AT1G67600			Acid phosphatase/vanadium-depe...		Lus10006432 [exp]	1.7	0.9139
AT3G27250			unknown protein		Lus10032077 [exp]	2.4	0.9156
AT3G02040		AtGDPD1, SRG3	Glycerophosphodiester phosphod...		Lus10041535 [exp]	2.6	0.9034
AT3G02040		AtGDPD1, SRG3	Glycerophosphodiester phosphod...		Lus10012556 [exp]	5.5	0.8796
AT2G26660		ATSPX2	ARABIDOPSIS THALIANA SPX DOMAI...		Lus10002908 [exp]	7.3	0.8825
AT4G09570		CPK4, ATCPK4	calcium-dependent protein kina...		Lus10009427 [exp]	7.4	0.9087
AT4G21200		ATGA2OX8	ARABIDOPSIS THALIANA GIBBERELL...		Lus10007640 [exp]	8.0	0.9119
AT3G18280			Bifunctional inhibitor/lipid-t...		Lus10013030 [exp]	11.0	0.9064
AT3G60160		ATMRP9, ABCC9	ATP-binding cassette C9, multi...		Lus10011875 [exp]	11.2	0.8637

Compare expression of checked genes

Lus10038923 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.