Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51410 350 / 2e-120 LUC7 N_terminus domain-containing protein (.1.2.3) AT5G17440 80 / 2e-16 LUC7 related protein (.1) AT3G03340 80 / 2e-16 UNE6 unfertilized embryo sac 6, LUC7 related protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027212 [exp] 462 / 6e-165 AT5G51410 380 / 2e-132 LUC7 N_terminus domain-containing protein (.1.2.3) Lus10031732 [exp] 379 / 9e-132 AT5G51410 381 / 1e-132 LUC7 N_terminus domain-containing protein (.1.2.3) Lus10031156 [exp] 360 / 9e-125 AT5G51410 360 / 1e-124 LUC7 N_terminus domain-containing protein (.1.2.3) Lus10026846 [exp] 84 / 1e-17 AT5G17440 522 / 0.0 LUC7 related protein (.1) Lus10020225 [exp] 80 / 2e-16 AT3G03340 516 / 1e-179 unfertilized embryo sac 6, LUC7 related protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G124300 [exp] 374 / 1e-129 AT5G51410 350 / 2e-120 LUC7 N_terminus domain-containing protein (.1.2.3) Potri.003G109000 [exp] 367 / 3e-127 AT5G51410 345 / 2e-118 LUC7 N_terminus domain-containing protein (.1.2.3) Potri.019G055000 [exp] 85 / 3e-18 AT5G17440 438 / 6e-153 LUC7 related protein (.1) Potri.013G084800 [exp] 80 / 2e-16 AT5G17440 473 / 2e-166 LUC7 related protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03194 [flax] [poplar] LUC7 LUC7 N_terminus
Representative CDS sequence Show only first row Show all	>Lus10038924 pacid=23150374 polypeptide=Lus10038924 locus=Lus10038924.g ID=Lus10038924.BGIv1.0 annot-version=v1.0 ATGGACCTCCAGAGAGCTATGCTTGACGAGCTCATGGGCGCAGCTCGTAATTTGACGGAGGACGAGAGAAAAGATTACAAGGAAATCACATGGGATTCCA AAGAGGTTTGCCCCTACTACATGGCTCGATTCTGTCCTCACGATCTCTTCGTCAACACCAAGAGCGATCTCGGACAATGCGATAGAGTCCACGACGCCAA GCTCAAGGAAAGCTTCGAGCAGTCTCCGAGGCACGAAAAGTTCTTGCTCAAGTTTGAGTCTGATCTAGCTCAGCGGTGTGAGAAATTGGTAATGGATTTG GACAGAAAAGTTAGACGTGGGCGTGAGCGTCTTGCTCAGGATGATGAACCTGGGCCGCTGATGCCGGCATCGGTGCAGAAGACTGAACAGTTGGCTGTTG TGGAAGAGAAGATAAAGAATCTACTTGGGCAAGTGGAGGACCTTGGCGAAGCTGGGAAAGTTGATGAAGCTCAAGCTCTTATGAAAAAGGTAGATGAATT GAATTCCGAGAAAGCACTGATTCAAGCTCAGCTTGACAAAGTAGCACTGCTCGCGCAGGAGAAAAAGATGGCACTGTGCGAGATTTGCGGCTCTTTTCTG ATTGCCAATGATGCTGCAGAGAGGACGCAGTCTCACATAACAGGGAAGCAACACATTGGTTATGGAATGGTTCGTGATTTCATTAGTGAGTACAAGAAGG CTCGGGAAAAGGTGAAGGAAGAGGAACGGCAAGCCAGGGAGAAAGAGGCCGAAGAGCGAAGGAATCAACAGGAGAAAGATCCTGAGAGGAGTAGGAGGAG TGGTTCGGGTGAAAGGGATCGGTATCAGGACCGGGACAGGTACCGTGAACGTGACTATGACAGGTCGAGAGAAAGGAACAGTAGAGGGTGGGACGGTGGT AAGGGTTCCAGGAACGGAAGGGATCGAGACAGGGATAGGCACTATAACCGGAGCAGGTCTCGTTCCCCTGCTAGGCATGGTAGAAGAAGGTCCTAG
AA sequence Show only first row Show all	>Lus10038924 pacid=23150374 polypeptide=Lus10038924 locus=Lus10038924.g ID=Lus10038924.BGIv1.0 annot-version=v1.0 MDLQRAMLDELMGAARNLTEDERKDYKEITWDSKEVCPYYMARFCPHDLFVNTKSDLGQCDRVHDAKLKESFEQSPRHEKFLLKFESDLAQRCEKLVMDL DRKVRRGRERLAQDDEPGPLMPASVQKTEQLAVVEEKIKNLLGQVEDLGEAGKVDEAQALMKKVDELNSEKALIQAQLDKVALLAQEKKMALCEICGSFL IANDAAERTQSHITGKQHIGYGMVRDFISEYKKAREKVKEEERQAREKEAEERRNQQEKDPERSRRSGSGERDRYQDRDRYRERDYDRSRERNSRGWDGG KGSRNGRDRDRDRHYNRSRSRSPARHGRRRS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G51410			LUC7 N_terminus domain-contain...		Lus10038924 [exp]	0	1
AT3G13224			RNA-binding (RRM/RBD/RNP motif...		Lus10032595 [exp]	1.0	0.8047
AT4G18372			Small nuclear ribonucleoprotei...		Lus10000241 [exp]	2.4	0.7911
AT3G57990			unknown protein		Lus10004184 [exp]	6.7	0.7310
AT1G74900		OTP43	organelle transcript processin...		Lus10042307 [exp]	8.0	0.7596
AT4G10925			Nuclear transport factor 2 (NT...		Lus10023064 [exp]	8.7	0.7593
AT5G66520			Tetratricopeptide repeat (TPR)...		Lus10011900 [exp]	10.2	0.7383
AT1G47056		VFB1	VIER F-box proteine 1 (.1)		Lus10018737 [exp]	10.8	0.8027
AT3G59520		ATRBL13	RHOMBOID-like protein 13 (.1)		Lus10008156 [exp]	11.0	0.7537
AT2G20280	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10023164 [exp]	12.4	0.7323
AT5G23680			Sterile alpha motif (SAM) doma...		Lus10036012 [exp]	16.4	0.7230

Compare expression of checked genes

Lus10038924 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.