Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47430 293 / 2e-101 PEX11B peroxin 11B (.1) AT1G47750 93 / 8e-23 PEX11A peroxin 11A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027213 [exp] 255 / 2e-87 AT3G47430 200 / 8e-66 peroxin 11B (.1) Lus10003945 [exp] 93 / 2e-22 AT1G47750 322 / 8e-112 peroxin 11A (.1) Lus10029260 [exp] 85 / 2e-19 AT1G47750 318 / 4e-110 peroxin 11A (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G108900 [exp] 303 / 2e-105 AT3G47430 324 / 1e-113 peroxin 11B (.1) Potri.001G124400 [exp] 303 / 2e-105 AT3G47430 329 / 1e-115 peroxin 11B (.1) Potri.002G134000 [exp] 100 / 1e-25 AT1G47750 332 / 8e-116 peroxin 11A (.1) Potri.014G042000 [exp] 95 / 3e-23 AT1G47750 327 / 8e-114 peroxin 11A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05648 [flax] [poplar] PEX11 Peroxisomal biogenesis factor 11 (PEX11)
Representative CDS sequence Show only first row Show all	>Lus10038925 pacid=23150513 polypeptide=Lus10038925 locus=Lus10038925.g ID=Lus10038925.BGIv1.0 annot-version=v1.0 ATGAACGACTCAGTGGACAAGCTAGTAATCTTCCTAGCCAAGCGAGACGGGATCGACAAGCTAGTCAAGACCTTCCAGTACGTCTCCAAGCTCGTCCACT GGCAGCTCGAGCCCTCGAGGACCAACCTCGCCACGCGCTTCAAGCATTGGGAGGTCGCGTCGGGCCTGAGCCGGAAGGCATTCCGAACTGGTCGGTCACT GACCGGGTTCAACGCCCTCCGGAGGAACCAGCCCGGTTCGACTAGTGGGATGAGGGCGCTGGCGGTCCTGGCCAACGCTGGGGAAATGGTCTACTTCTTC TTCGACCATTTTCTCTGGCTGGCCAGGGTCGGGACGCTTGACGCCAGGCTGGCTCGTAGGATGAGCTTCGTGTCGGCGTTCGGGGAGTCGTTCGGGTACG TGTTTTTCGTGATCGGGGATTTGGTTATGATCCGGGAAGGGATTCGAAAGGAGAGGGAGTTGGTTCGAGGTTTGAAGGAAGGGCGCGGAGCAGGGAAGGA GGAGGATGAAACGGCGTCGTTGATTGCAAAGATTCGAGGGGATAGAGTTATGAGGCTGATGGGCATTGCTGCAAACCTGGCCGATTTGATTATCGCGCTG GCGGATATTGAACCGAACCCGTTTTGTAACCATACGGTTACTTTGGGGATTAGTGGGTTGGTTTCCGCTTGGGCCGGGTGGTATAGGAATTGGCCTTCCT AG
AA sequence Show only first row Show all	>Lus10038925 pacid=23150513 polypeptide=Lus10038925 locus=Lus10038925.g ID=Lus10038925.BGIv1.0 annot-version=v1.0 MNDSVDKLVIFLAKRDGIDKLVKTFQYVSKLVHWQLEPSRTNLATRFKHWEVASGLSRKAFRTGRSLTGFNALRRNQPGSTSGMRALAVLANAGEMVYFF FDHFLWLARVGTLDARLARRMSFVSAFGESFGYVFFVIGDLVMIREGIRKERELVRGLKEGRGAGKEEDETASLIAKIRGDRVMRLMGIAANLADLIIAL ADIEPNPFCNHTVTLGISGLVSAWAGWYRNWPS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G47430		PEX11B	peroxin 11B (.1)		Lus10038925 [exp]	0	1
AT3G47430		PEX11B	peroxin 11B (.1)		Lus10027213 [exp]	1.0	0.9338
AT2G23620		ATMES1	ARABIDOPSIS THALIANA METHYL ES...		Lus10009203 [exp]	2.4	0.9283
AT3G29590		AT5MAT	HXXXD-type acyl-transferase fa...		Lus10041656 [exp]	2.4	0.9030
AT3G01500		SABP3, ATBCA1, ...	ARABIDOPSIS THALIANA SALICYLIC...		Lus10008780 [exp]	3.5	0.8985
AT5G59200		OTP80	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10005294 [exp]	7.0	0.8766
					Lus10014003 [exp]	11.2	0.8407
AT1G24110			Peroxidase superfamily protein...		Lus10004234 [exp]	11.8	0.8427
AT2G36270	bZIP	EEL, GIA1, ABI5	GROWTH-INSENSITIVITY TO ABA 1,...		Lus10022720 [exp]	16.3	0.8579
AT1G51400			Photosystem II 5 kD protein (....		Lus10014908 [exp]	17.7	0.8814
AT3G05410			Photosystem II reaction center...		Lus10029903 [exp]	23.4	0.8775

Compare expression of checked genes

Lus10038925 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.