Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45010 339 / 3e-117 PLAC8 family protein (.1.2) AT5G51400 319 / 3e-109 PLAC8 family protein (.1) AT5G62410 153 / 8e-41 TTN3, ATSMC4, ATCAP-E1, SMC2 TITAN 3, structural maintenance of chromosomes 2 (.1) AT3G47460 151 / 3e-40 ATSMC2 Structural maintenance of chromosomes (SMC) family protein (.1) AT2G40935 96 / 3e-23 PLAC8 family protein (.1.2.3) AT3G18450 58 / 6e-10 PLAC8 family protein (.1) AT3G18470 56 / 2e-09 PLAC8 family protein (.1) AT1G49030 57 / 3e-09 PLAC8 family protein (.1) AT3G18460 56 / 3e-09 PLAC8 family protein (.1) AT1G58320 54 / 7e-09 PLAC8 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027214 [exp] 466 / 4e-167 AT2G45010 336 / 1e-117 PLAC8 family protein (.1.2) Lus10031733 [exp] 358 / 7e-125 AT2G45010 313 / 3e-109 PLAC8 family protein (.1.2) Lus10028184 [exp] 318 / 4e-109 AT2G45010 319 / 2e-111 PLAC8 family protein (.1.2) Lus10042885 [exp] 313 / 7e-107 AT2G45010 323 / 1e-112 PLAC8 family protein (.1.2) Lus10027215 [exp] 191 / 5e-54 AT3G47460 1795 / 0.0 Structural maintenance of chromosomes (SMC) family protein (.1) Lus10005257 [exp] 80 / 3e-17 AT2G40935 228 / 6e-77 PLAC8 family protein (.1.2.3) Lus10009036 [exp] 62 / 2e-11 AT1G68630 122 / 2e-36 PLAC8 family protein (.1) Lus10004063 [exp] 59 / 2e-10 AT1G68630 132 / 2e-40 PLAC8 family protein (.1) Lus10008890 [exp] 56 / 3e-09 AT1G68630 119 / 6e-35 PLAC8 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G108800 [exp] 380 / 1e-133 AT5G51400 339 / 4e-119 PLAC8 family protein (.1) Potri.001G124500 [exp] 361 / 6e-126 AT5G51400 330 / 1e-115 PLAC8 family protein (.1) Potri.002G141600 [exp] 312 / 1e-106 AT2G45010 303 / 6e-105 PLAC8 family protein (.1.2) Potri.001G125000 [exp] 174 / 4e-48 AT5G62410 1771 / 0.0 TITAN 3, structural maintenance of chromosomes 2 (.1) Potri.003G108400 [exp] 169 / 2e-46 AT5G62410 1732 / 0.0 TITAN 3, structural maintenance of chromosomes 2 (.1) Potri.006G024900 [exp] 85 / 2e-19 AT2G40935 261 / 6e-90 PLAC8 family protein (.1.2.3) Potri.010G109100 [exp] 70 / 4e-14 AT1G14870 165 / 1e-52 PLANT CADMIUM RESISTANCE 2 (.1) Potri.010G108800 [exp] 69 / 1e-13 AT1G14870 179 / 8e-58 PLANT CADMIUM RESISTANCE 2 (.1) Potri.010G108900 [exp] 69 / 2e-13 AT1G14870 142 / 4e-43 PLANT CADMIUM RESISTANCE 2 (.1) Potri.008G132775 [exp] 67 / 4e-13 AT1G14870 185 / 2e-60 PLANT CADMIUM RESISTANCE 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04749 [flax] [poplar] PLAC8 PLAC8 family
Representative CDS sequence Show only first row Show all	>Lus10038926 pacid=23150262 polypeptide=Lus10038926 locus=Lus10038926.g ID=Lus10038926.BGIv1.0 annot-version=v1.0 ATGTCCGACGCAGATGGGAATTCGCGGTACGTGAAGCTGACGAAAGAGCAAGCTCCTCAGGAGGAGGACATTAAGCCAGGAGAGCTTAACCAGCCAATCG ACGTCCCTCAGTTGACTGTTCGCAAGTGCAACGAGTGTGGCCAGGCGTTGCCGGAGGATTACTTGGCGCCGACTGATGAGCCGTGGACTTCCGGTATCTT TGGATGCGCTGAAGACACTGAGAGCTGCTGGACGGGACTGTTGTGCCCGTGTGTGCTGTTTGGCCGGAATCTGGAGAAGCTGAGAGACGATACGCCGTGG TCTACGCCATGCCTTTGTCACGCTATATGCATCGAGGGAGGACTGGCAGTAGCAGCAGTAACTGCGCTCTCTCACGGTGCTATAGTCGATCCAAACACTT CGTTCCTCATATGTGAAGGTCTGTTGTTCGCTTGGTGGATGTGCGGGATATACACTGGCCTTGCTAGGCAGTCATTGCAGAAGAAGTATCATCTCAAGAA CTCGCCTTGTGACCCGTGCTTGGTGCACTGCTGCCTGCACTGGTGCGCACTCTGCCAAGAGCACAGGGAAATGAAGGGCCGCCTTTCGGACAACTTCGTC ATGCCAATGACCATTGTCAACCCGCCACCCGTCCAAGAGATGTCCGCAACTGAAACCTCTACCGGAGAGAACCACCAACACAATCATTCCGCATCATCGT CTTCAGAGAACAATAACAACAACAGCGGCGCTGCTGAGAACAAAATAGCAGAAATTTTAATACTCGAGGAGGCGGCTGGGACGAGGATGTACGAAACAAA GAAGGAGAATGCGTTGAAGACACTCGAGAAGAAGCAGAGTAAGGTAGATGAGATTAATATGCTTCTTGACCAGGAGATACTGCCTGCTCTGGAGAAGTTG AGGAGGGAAAGGATGCAGTATATGCAGTGGTCTAATGGCAATGCCGAATTGGACCGACTGAATAGATTCTGCACTGCTTATGACTATGTTCAAGCCGAGA GGATTAGAGACAGTGTGGCTGGTGAGGTTGATGGGATAAAATCCAAAATTATATGTGTGTTGCGTTCTTCCTAA
AA sequence Show only first row Show all	>Lus10038926 pacid=23150262 polypeptide=Lus10038926 locus=Lus10038926.g ID=Lus10038926.BGIv1.0 annot-version=v1.0 MSDADGNSRYVKLTKEQAPQEEDIKPGELNQPIDVPQLTVRKCNECGQALPEDYLAPTDEPWTSGIFGCAEDTESCWTGLLCPCVLFGRNLEKLRDDTPW STPCLCHAICIEGGLAVAAVTALSHGAIVDPNTSFLICEGLLFAWWMCGIYTGLARQSLQKKYHLKNSPCDPCLVHCCLHWCALCQEHREMKGRLSDNFV MPMTIVNPPPVQEMSATETSTGENHQHNHSASSSSENNNNNSGAAENKIAEILILEEAAGTRMYETKKENALKTLEKKQSKVDEINMLLDQEILPALEKL RRERMQYMQWSNGNAELDRLNRFCTAYDYVQAERIRDSVAGEVDGIKSKIICVLRSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45010			PLAC8 family protein (.1.2)		Lus10038926 [exp]	0	1
AT2G25430			epsin N-terminal homology (ENT...		Lus10001502 [exp]	1.0	0.9237
AT2G26920			Ubiquitin-associated/translati...		Lus10036096 [exp]	2.0	0.9120
AT2G45010			PLAC8 family protein (.1.2)		Lus10027214 [exp]	4.0	0.8805
AT3G58050			unknown protein		Lus10021073 [exp]	4.9	0.8852
AT3G21610			Acid phosphatase/vanadium-depe...		Lus10000883 [exp]	7.1	0.8585
AT3G06720		IMPA1, IMPA-1, ...	importin alpha isoform 1 (.1.2...		Lus10010933 [exp]	7.7	0.8660
AT1G26830		CUL3A, ATCUL3A,...	cullin 3A, cullin 3 (.1)		Lus10036739 [exp]	9.5	0.8674
AT1G29260		PEX7, ATPEX7	ARABIDOPSIS PEROXIN 7, peroxin...		Lus10007274 [exp]	10.1	0.8843
AT5G11280			unknown protein		Lus10002030 [exp]	12.2	0.8955
AT3G01930			Major facilitator superfamily ...		Lus10035203 [exp]	12.5	0.8388

Compare expression of checked genes

Lus10038926 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.