Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07670 471 / 1e-153 RNI-like superfamily protein (.1) AT5G51380 447 / 9e-145 RNI-like superfamily protein (.1) AT5G51370 426 / 4e-137 RNI-like superfamily protein (.1.2) AT4G15475 103 / 2e-22 F-box/RNI-like superfamily protein (.1) AT5G23340 77 / 3e-14 RNI-like superfamily protein (.1) AT2G25490 71 / 5e-12 FBL6, EBF1 EIN3-binding F box protein 1 (.1) AT5G27920 68 / 3e-11 F-box family protein (.1) AT5G25350 64 / 5e-10 EBF2 EIN3-binding F box protein 2 (.1) AT5G07660 63 / 1e-09 SMC6A structural maintenance of chromosomes 6A (.1) AT5G61460 61 / 8e-09 SMC6B, ATRAD18, MIM STRUCTURAL MAINTENANCE OF CHROMOSOMES 6B, hypersensitive to MMS, irradiation and MMC, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027218 [exp] 868 / 0 AT5G07670 514 / 7e-180 RNI-like superfamily protein (.1) Lus10027217 [exp] 829 / 0 AT5G07670 508 / 3e-178 RNI-like superfamily protein (.1) Lus10031165 [exp] 630 / 0 AT5G07670 530 / 0.0 RNI-like superfamily protein (.1) Lus10031742 [exp] 608 / 0 AT5G07670 518 / 0.0 RNI-like superfamily protein (.1) Lus10031741 [exp] 575 / 0 AT5G07670 521 / 0.0 RNI-like superfamily protein (.1) Lus10031164 [exp] 569 / 0 AT5G07670 525 / 0.0 RNI-like superfamily protein (.1) Lus10012764 [exp] 102 / 1e-21 AT4G15475 813 / 0.0 F-box/RNI-like superfamily protein (.1) Lus10040998 [exp] 87 / 2e-17 AT5G23340 595 / 0.0 RNI-like superfamily protein (.1) Lus10013444 [exp] 86 / 4e-17 AT5G23340 591 / 0.0 RNI-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G125800 [exp] 579 / 0 AT5G07670 509 / 4e-178 RNI-like superfamily protein (.1) Potri.003G107900 [exp] 575 / 0 AT5G07670 525 / 0.0 RNI-like superfamily protein (.1) Potri.002G143200 [exp] 446 / 1e-143 AT5G07670 466 / 3e-161 RNI-like superfamily protein (.1) Potri.014G059100 [exp] 440 / 2e-141 AT5G07670 451 / 2e-155 RNI-like superfamily protein (.1) Potri.005G088800 [exp] 83 / 3e-16 AT5G23340 567 / 0.0 RNI-like superfamily protein (.1) Potri.006G105400 [exp] 81 / 4e-15 AT5G01720 712 / 0.0 RNI-like superfamily protein (.1) Potri.016G128400 [exp] 79 / 1e-14 AT5G01720 712 / 0.0 RNI-like superfamily protein (.1) Potri.018G027700 [exp] 71 / 6e-12 AT2G25490 820 / 0.0 EIN3-binding F box protein 1 (.1) Potri.006G254100 [exp] 69 / 2e-11 AT2G25490 795 / 0.0 EIN3-binding F box protein 1 (.1) Potri.003G107700 [exp] 67 / 6e-11 AT5G61460 1237 / 0.0 STRUCTURAL MAINTENANCE OF CHROMOSOMES 6B, hypersensitive to MMS, irradiation and MMC, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10038927 pacid=23150412 polypeptide=Lus10038927 locus=Lus10038927.g ID=Lus10038927.BGIv1.0 annot-version=v1.0 ATGAGCAGCACCTTAGAAGCACCCAGGTTGTCCATTCCTCCTGACGCTCTTCCCAGAAGTGATCATCCTACTATTCTATCTATTATATGTTCCACCAATG ATACTGTACTGAATGTGCTGGTAGATATGGGAAAGTGCTCCAATGCTGCGAAGGACATGTCAAAAAGGAAACTAGAGCTGCAGGATATGAAGAGATCAAT CAACACTGATAGCATGTTGCCATCAGCATCAACTTTAGATGAGCTTCATGAAGAAATTTCTGATGCGATGAGTCGGAAAATCAGCATGGACACGTTGGTG GACTTTGCTCTAGGCCAGGGTTGCCAGTGGATATTTATCACTCCTCACGATATCAGAAATTTTACTCATAATCTCAATCTGGAGTGTCAGCAATTTAAAA AATTTGCGGTAAACAGTACCGATCTCTCTAGCTCTCTCAGTTCCTCCGTCGAAGAAGCACAAGATTTCCCATTTGATACAGTAACGCAATTGCAGTCTCA CTGTGGAGGAAGAAGCTCCACTCCATCGTCGATGATGGGTACATTACACGATACGAAACCGGCGACAACTCCGACGAACAAGAAGAAGAAGAAGGCGACG ACGAAGAAACATAGGGGATCCACCTGGTCAGACCTCTGGCACAAAACCTCCGTCGCCACCAAGCCTCTCAAGCATGCCGTCTACGCTATGCAATTGCAGA TCCCATCTCTCTCCAGAGGTGGGACGATTTCCCCCAAAAAAGCTCCAACCGTAGACTTCTTCTCCAATCCGACGGCATCCCCCAAGGGCAAGCTCGAACC AGTGATCTGCAATCTCTCCGACAATGTCGACCGTACACTTCTATTGAACGATGAGATACTCTTGAAGATCTTATCTTTGCTGCCTGGCTCACTGAGGAGC TCTTACTCCAATTGCTTGGTATGCAAGCGGTGGCTGAATCTCCAAGGTCGTCTGGTTAAGTCTCTCAAGGTTTTGGATTGGGAGTTTGTTGAATCAGGTA GGTTCATTTCCAGGTTTCCTAATTTAAACCATGTGGATTTGATCAGTGGATGTGTTGGGGTTGTTGATCGTTCGGATTCGAGTATTGCTTTGAGCCATAA GCTAATCTCTACGCATTTGGATTTCGGTGTGTTGCCAACAAGTTGGCGAGTTTGTGAAGGGAATTTGTTGCCAGTTGAGATTGTTGATGGAGGGCTTAGA GTTTTAGCTAATGGCTGTCCTAATTTGCGCCGGCTTGCTGTGATCGGCGCCAGTGAGTTGGGGATATTAACCGTGGCGGAAGAGTGCCCGACTTTACAGG AGCTCGAGTTGCATCGATGTAACGACAATACGCTGCGAGGGATCGCAGCTTGTTCGAATTTGCAGATAATGAAGCTTGTGGGGAACGTGTACGGACTTTA TAGCTCGTTGGTTACGGATGTCGGGTTAACGATTCTGGCTCAAGGGTGCAAGAGATTGGTGAAGCTTGAGCTTAATGGATGCGAGGGTGGGTTCGATGGG ATCAAGGCGATCGGGCAGTGCTGTCAGATGCTCGAGGAATTGACTGTTTGCGATCATAGGATGAGCGATGGGTGGTTGGTTGCTCTACCCTTCTGCGAAA ATTTGAAGACTTTGAGGCTAGTTTCGTGTAAGAGAATCGATATGATCTCAGGTGAGGTTCTGGGTTGTTGTTTAGCGCTTGAAAGATTGCATCTTGAGAG GTGTTCTTTAAGGGACAAAAATGGCGTTGGGGCTTTGTTTAAGGTATGTGGAACTGTGAGAGAGATTGCTGTGAGAAATTGCTGGGGATTTGATGATGAA GTTTTCGGCTTGGCAAGCATTTGCAGGAGGGTAGAGGTACTGAATCTAGAAGGATGCTCCTTGCTGACAACACAAGGCATCGAATCCGTGCTGCTTACGT GGAACGAGCTTCAAACTCTGAAGATAGAGTCCTGTAAGAACATAAAAGATGGAGAAATCTCTCCTGCACTTTCGTCATTGTTCTCCGGTCTCAAAGACCT CAGATGGAGGCCGGATTCCAAATCACACCTTGTGGCAGGTCTCGTGGGGAGCGGTTTGGGGAAGAAAGGCCGCAAATTCTTCAGGAAATCACTAATCCAC CTCGAAAGTGATTCAGTCAAAGCACACAGTGACCGGGCAGAGCGTAAGCTTAGAGGACAGTATCTTTCTTGCCTACGAAACTCCACTCGTCGGTTTCGTA TACAACCATCCCATCCACCCCGACGACCACCGCCTCCGCCGCCGCTACTCCGCCAGTTTCAACCTCTTCATACAGCGTCGGAAATAGAGGACGAAGGTAA TTTACGGATTGCAGATTGTTTGATAAAAGTCCCAGCCGAGAAAATTAGATTCGGAGGATTATCAGCCTCGGACGGTCACCGGAGGATACCGGAGATGTCT TCTCCGAAGAAAAAGAATGAGAACGGGGTGCCGATGACCTGGCCGGAGCTCTGGCTCAAGGCCGCCGCTATGCAATCTCCGTCTCTTTCTGGAGGGAGCT CTTCGCCCAGCTGTAGCCTCTCCGAACCTGCAAGTCCGACATTTTCCGATACCAAATCCCTTATTGGAATCCCTTCAAAAGCTGTTGACTTTACCCTGCT ATTGAACGACGAAATCCTTCTCAAAATCCTATCTTTACTGCCCGAATCACAGAGGAACTGCAACAGGTTGGTCTGCAAGCGCTGGCTGAATCTCCAAGGT CGACTATTTCGGTCTCTCAGGATTCTCGATTGGGGATTTCTCGAATCAGGTGTGTTGACTTCCAGGTTTCCTAGTTTGACTGATGTAGATTTAGTCAATG CTTGTGTTGTTAATGTTACCCCAGTGGGTTCTAGTAGTGTTTGCCTGACCCATCGGCTTATATCTGCTAATATGAACTGTGAAATCTCTATGTTCTCGTT ACCGGATTGGCGAGTTTGTGAGGAGTACTTGTTGCCAGTTGATGTTGTTGATAAAGGTCTCAAGGTTATAACCAATGGCTGCCCAAACTTGCGCCGGCTT GCTGTGATCGGTGCCAGTGAACAAGGACTGATAAGCCTCGCGGAAAAGTGTCTGACTTTGCAGGAATTGGAGCTCCATGGATGTAGTGACAGTGTCCTGC TAGGGATTTCAGCTTGTACCAATCTGCAGATACTGAAAATTGTGGGAGATGTGTATGGACTTTACAGTTCGTTGGTCTCTGATGTTGGTTTGACGATTCT GGCTCAAGGTTGCAAGAGATTGGTGAAGCTCGAGCTTTATGGATGCGAAGGTAGTTACGATGGGGTTAAGGCGATAGGACAATGCTGCCAGATGCTTGAA GAGTTGACTGTTTGTGATCATAAGATGGATGATGGGTGGTTGGCAGCTCTTCAATTCTGCGAAAATCTGAAGAGCCTGAAGTTAATGTCGTGTAATAGGA TAGATGATGTGCCAGGGCCTGATGAATATCTGGGGTTTTGCTTTTCGCTCGAGACTCTTCAGATGGAGAGATGTCAGTTGAGGGATGGGAATGGAGTGAG AGCTTTGTTTAAGGTTTGCGAAGCTGCAAGGGAAATCGTAATTCGAGATTGTTGGGGATTAAATGACGAAGTTTTCAGCTTGGCAAACATCTGCAGGAGG GTAAAAGAACTCGATTTGGAAGGATGTTTGGTACTGACAATAGAAGGGCTGGAGTCGGTACTTCTAACATGGAGTGAGCTTGAAAATCTGAAGATAGAGT CGTGTAAGAAAATAAACGCCGGCGTCATATCTCCAGCGCTTTCCAACTTATTCTGTAGCCTGAAAGAGCTTAGATGGAGGCCGGATTCCAAGTCGATCCT CACTGCAGGTCTAACGGGGACCGGCATTGGAGAAAAGGGTAGCAAATTCTTCAGAAAGTCATGA
AA sequence Show only first row Show all	>Lus10038927 pacid=23150412 polypeptide=Lus10038927 locus=Lus10038927.g ID=Lus10038927.BGIv1.0 annot-version=v1.0 MSSTLEAPRLSIPPDALPRSDHPTILSIICSTNDTVLNVLVDMGKCSNAAKDMSKRKLELQDMKRSINTDSMLPSASTLDELHEEISDAMSRKISMDTLV DFALGQGCQWIFITPHDIRNFTHNLNLECQQFKKFAVNSTDLSSSLSSSVEEAQDFPFDTVTQLQSHCGGRSSTPSSMMGTLHDTKPATTPTNKKKKKAT TKKHRGSTWSDLWHKTSVATKPLKHAVYAMQLQIPSLSRGGTISPKKAPTVDFFSNPTASPKGKLEPVICNLSDNVDRTLLLNDEILLKILSLLPGSLRS SYSNCLVCKRWLNLQGRLVKSLKVLDWEFVESGRFISRFPNLNHVDLISGCVGVVDRSDSSIALSHKLISTHLDFGVLPTSWRVCEGNLLPVEIVDGGLR VLANGCPNLRRLAVIGASELGILTVAEECPTLQELELHRCNDNTLRGIAACSNLQIMKLVGNVYGLYSSLVTDVGLTILAQGCKRLVKLELNGCEGGFDG IKAIGQCCQMLEELTVCDHRMSDGWLVALPFCENLKTLRLVSCKRIDMISGEVLGCCLALERLHLERCSLRDKNGVGALFKVCGTVREIAVRNCWGFDDE VFGLASICRRVEVLNLEGCSLLTTQGIESVLLTWNELQTLKIESCKNIKDGEISPALSSLFSGLKDLRWRPDSKSHLVAGLVGSGLGKKGRKFFRKSLIH LESDSVKAHSDRAERKLRGQYLSCLRNSTRRFRIQPSHPPRRPPPPPPLLRQFQPLHTASEIEDEGNLRIADCLIKVPAEKIRFGGLSASDGHRRIPEMS SPKKKNENGVPMTWPELWLKAAAMQSPSLSGGSSSPSCSLSEPASPTFSDTKSLIGIPSKAVDFTLLLNDEILLKILSLLPESQRNCNRLVCKRWLNLQG RLFRSLRILDWGFLESGVLTSRFPSLTDVDLVNACVVNVTPVGSSSVCLTHRLISANMNCEISMFSLPDWRVCEEYLLPVDVVDKGLKVITNGCPNLRRL AVIGASEQGLISLAEKCLTLQELELHGCSDSVLLGISACTNLQILKIVGDVYGLYSSLVSDVGLTILAQGCKRLVKLELYGCEGSYDGVKAIGQCCQMLE ELTVCDHKMDDGWLAALQFCENLKSLKLMSCNRIDDVPGPDEYLGFCFSLETLQMERCQLRDGNGVRALFKVCEAAREIVIRDCWGLNDEVFSLANICRR VKELDLEGCLVLTIEGLESVLLTWSELENLKIESCKKINAGVISPALSNLFCSLKELRWRPDSKSILTAGLTGTGIGEKGSKFFRKS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G07670			RNI-like superfamily protein (...		Lus10038927 [exp]	0	1
AT5G13020		AtEML3, ACK1	EMSY-like 3, Emsy N Terminus (...		Lus10004188 [exp]	1.0	0.9074
AT5G11200			DEAD/DEAH box RNA helicase fam...		Lus10014260 [exp]	1.4	0.8876
AT3G12280		RB1, RBL1, RBR1...	RETINOBLASTOMA 1, RETINOBLASTO...		Lus10008667 [exp]	3.5	0.8843
AT1G43190		PTB3	polypyrimidine tract-binding p...		Lus10018871 [exp]	3.9	0.8663
AT5G11860		SSP5	SCP1-like small phosphatase 5 ...		Lus10015787 [exp]	4.9	0.8636
AT2G03070		MED8	mediator subunit 8 (.1)		Lus10037308 [exp]	5.7	0.8597
AT5G61060		HDA5, HDA05, AT...	histone deacetylase 5 (.1.2)		Lus10034689 [exp]	5.7	0.8676
AT3G18640	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10020889 [exp]	6.0	0.8574
AT5G25800			Polynucleotidyl transferase, r...		Lus10029748 [exp]	7.9	0.8605
AT3G24440		VRN5, VIL1	VERNALIZATION 5, VIN3-LIKE 1, ...		Lus10019393 [exp]	8.1	0.8527

Compare expression of checked genes

Lus10038927 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.