Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02030 74 / 2e-15 C2H2ZnF C2H2-like zinc finger protein (.1) AT4G35280 71 / 3e-14 C2H2ZnF DAZ2 DUO1-ACTIVATED ZINC FINGER 2, C2H2-like zinc finger protein (.1) AT2G28200 68 / 4e-13 C2H2ZnF C2H2-type zinc finger family protein (.1) AT3G19580 66 / 1e-12 C2H2ZnF AZF2 zinc-finger protein 2 (.1.2) AT3G49930 65 / 2e-12 C2H2ZnF C2H2 and C2HC zinc fingers superfamily protein (.1) AT2G17180 65 / 3e-12 C2H2ZnF DAZ1 DUO1-ACTIVATED ZINC FINGER 1, C2H2-like zinc finger protein (.1) AT1G27730 64 / 8e-12 C2H2ZnF ZAT10, STZ salt tolerance zinc finger (.1) AT3G60580 64 / 1e-11 C2H2ZnF C2H2-like zinc finger protein (.1) AT5G67450 63 / 2e-11 C2H2ZnF AZF1 zinc-finger protein 1 (.1) AT5G03510 62 / 3e-11 C2H2ZnF C2H2-type zinc finger family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027220 [exp] 285 / 1e-96 AT1G02030 99 / 1e-24 C2H2-like zinc finger protein (.1) Lus10021409 [exp] 74 / 2e-15 AT3G10470 157 / 4e-46 C2H2-type zinc finger family protein (.1) Lus10022610 [exp] 67 / 3e-13 AT2G28200 147 / 1e-43 C2H2-type zinc finger family protein (.1) Lus10031166 [exp] 64 / 1e-11 AT1G02030 72 / 1e-14 C2H2-like zinc finger protein (.1) Lus10014631 [exp] 62 / 4e-11 AT1G27730 144 / 4e-42 salt tolerance zinc finger (.1) Lus10033798 [exp] 62 / 4e-11 AT1G27730 146 / 3e-43 salt tolerance zinc finger (.1) Lus10021637 [exp] 62 / 1e-10 AT1G02030 99 / 8e-23 C2H2-like zinc finger protein (.1) Lus10023912 [exp] 61 / 1e-10 AT5G03510 160 / 1e-47 C2H2-type zinc finger family protein (.1) Lus10015740 [exp] 61 / 1e-10 AT1G02030 104 / 3e-25 C2H2-like zinc finger protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G125900 [exp] 80 / 3e-17 AT3G60580 98 / 1e-23 C2H2-like zinc finger protein (.1) Potri.001G295500 [exp] 68 / 2e-13 AT1G27730 144 / 2e-42 salt tolerance zinc finger (.1) Potri.009G089400 [exp] 65 / 3e-12 AT3G19580 120 / 6e-33 zinc-finger protein 2 (.1.2) Potri.004G216900 [exp] 66 / 4e-12 AT2G28200 172 / 4e-52 C2H2-type zinc finger family protein (.1) Potri.002G119300 [exp] 64 / 9e-12 AT1G27730 186 / 8e-59 salt tolerance zinc finger (.1) Potri.014G017300 [exp] 63 / 1e-11 AT1G27730 189 / 4e-60 salt tolerance zinc finger (.1) Potri.002G143800 [exp] 62 / 1e-10 AT3G60580 199 / 1e-61 C2H2-like zinc finger protein (.1) Potri.014G066100 [exp] 61 / 1e-10 AT3G60580 176 / 1e-52 C2H2-like zinc finger protein (.1) Potri.006G121600 [exp] 60 / 1e-10 AT5G04390 136 / 4e-38 C2H2-type zinc finger family protein (.1) Potri.008G051200 [exp] 59 / 1e-10 AT2G28710 130 / 8e-39 C2H2-type zinc finger family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10038929 pacid=23150371 polypeptide=Lus10038929 locus=Lus10038929.g ID=Lus10038929.BGIv1.0 annot-version=v1.0 ATGAACAACAACCAGCCGAGGTCGTGCAAGATCTGCAACCGATGGTTCCCAACTGGCAAATCCATGGGGGGGCACATGAGATCTCACTTGGCCAAACTCC CTCTCCCTCCCAAACCCTATATCCCACCTCCTCCGCCGCAGCAGCAGCAGCCAGCTGGACTACTACTTACCTCGTCAGATCCGCCGGCGCCGACGCCCTC ATATTCCCCCAGCTCCACCCTCGCCAACTCCGCCGAGGATGAGGATTCTTCGTATCCCGTCATGACTCAGACCAGATCGGTCCGAAGGAAACACACTCCT CCGCCTCCACCGCCCCCACCCGAACAGGTTACTAGCTCAGGTGAGAGAGAGGCGGAGGTAGCCATGTGTCTCTTGATGATGTCCTTTGGCCGTGGTGGAG GCGGAGGCGGTAAGTTGTACAGATGTGAGAAGTGCAATAGAGGGTTCGGATCCTACCAGGCATTAGGAGGCCACCGTGCAAGCCACAACAAGACCGGGAG GCAGCCGGTGATGATGGACTACGATGATGACGGTGAAGAAGAAGATGATGAAGACTATCATCATATCATTGATGATGAAGCCAGCAGAATTGGAAGCAAC AGCCGGAGGATGTTCAAGTGCTCGATTTGCGACAAGGAGTTCGAGTCCGGTCAGGCATTGGGAGGGCACAAGAAGGTACACTTTGCTGAGATGAACAAGA TGAAGAAGAAGCCGAGGTTGATTCTGTCTATAGACCTGAATTCGCCCATTCCTGATCAGGACGATGATGATCAGCAGGAAGTTATTAGTCGTGATGCATA TCGGTTTTCGAGGTGA
AA sequence Show only first row Show all	>Lus10038929 pacid=23150371 polypeptide=Lus10038929 locus=Lus10038929.g ID=Lus10038929.BGIv1.0 annot-version=v1.0 MNNNQPRSCKICNRWFPTGKSMGGHMRSHLAKLPLPPKPYIPPPPPQQQQPAGLLLTSSDPPAPTPSYSPSSTLANSAEDEDSSYPVMTQTRSVRRKHTP PPPPPPPEQVTSSGEREAEVAMCLLMMSFGRGGGGGGKLYRCEKCNRGFGSYQALGGHRASHNKTGRQPVMMDYDDDGEEEDDEDYHHIIDDEASRIGSN SRRMFKCSICDKEFESGQALGGHKKVHFAEMNKMKKKPRLILSIDLNSPIPDQDDDDQQEVISRDAYRFSR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G02030	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10038929 [exp]	0	1
AT1G26140			unknown protein		Lus10034406 [exp]	5.3	0.6874
AT4G17920			RING/U-box superfamily protein...		Lus10000487 [exp]	7.9	0.6345
					Lus10004437 [exp]	14.4	0.6262
AT2G24370			Protein kinase protein with ad...		Lus10027593 [exp]	16.1	0.6262
AT5G02910			F-box/RNI-like superfamily pro...		Lus10000727 [exp]	17.7	0.6262
AT3G08030			Protein of unknown function, D...		Lus10029502 [exp]	19.1	0.6262
AT3G18170			Glycosyltransferase family 61 ...		Lus10032454 [exp]	20.4	0.6262
					Lus10021739 [exp]	21.6	0.6262
					Lus10039674 [exp]	22.8	0.6262
AT5G52790			CBS domain-containing protein ...		Lus10027527 [exp]	23.6	0.5948

Compare expression of checked genes

Lus10038929 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.